Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2097 and DvMF_2098 are separated by 280 nucleotides DvMF_2098 and DvMF_2099 are separated by 130 nucleotides
DvMF_2097: DvMF_2097 - NADPH-dependent FMN reductase (RefSeq), at 2,613,487 to 2,614,197
_2097
DvMF_2098: DvMF_2098 - major facilitator superfamily MFS_1 (RefSeq), at 2,614,478 to 2,615,878
_2098
DvMF_2099: DvMF_2099 - glutamine synthetase, type I (RefSeq), at 2,616,009 to 2,617,352
_2099
Position (kb)
2614
2615
2616 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2613.541 kb on - strand at 2613.543 kb on + strand at 2613.718 kb on - strand, within DvMF_2097 at 2614.104 kb on - strand, within DvMF_2097 at 2614.199 kb on - strand at 2614.206 kb on + strand at 2614.232 kb on - strand at 2614.241 kb on - strand at 2614.328 kb on - strand at 2614.534 kb on - strand at 2614.712 kb on + strand, within DvMF_2098 at 2614.795 kb on + strand, within DvMF_2098 at 2614.803 kb on - strand, within DvMF_2098 at 2614.803 kb on - strand, within DvMF_2098 at 2615.104 kb on + strand, within DvMF_2098 at 2615.137 kb on - strand, within DvMF_2098 at 2615.199 kb on + strand, within DvMF_2098 at 2615.505 kb on + strand, within DvMF_2098 at 2615.540 kb on - strand, within DvMF_2098 at 2615.570 kb on + strand, within DvMF_2098 at 2615.674 kb on + strand, within DvMF_2098 at 2615.682 kb on - strand, within DvMF_2098 at 2615.738 kb on - strand, within DvMF_2098 at 2615.805 kb on + strand at 2616.247 kb on - strand, within DvMF_2099 at 2616.252 kb on - strand, within DvMF_2099 at 2616.252 kb on - strand, within DvMF_2099 at 2616.432 kb on - strand, within DvMF_2099 at 2616.666 kb on + strand, within DvMF_2099 at 2616.715 kb on + strand, within DvMF_2099 at 2616.723 kb on - strand, within DvMF_2099 at 2616.735 kb on + strand, within DvMF_2099
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 2,613,541 - -0.6 2,613,543 + -0.7 2,613,718 - DvMF_2097 0.32 -0.6 2,614,104 - DvMF_2097 0.87 -0.5 2,614,199 - -1.1 2,614,206 + -0.2 2,614,232 - -1.3 2,614,241 - -2.6 2,614,328 - -0.6 2,614,534 - -0.2 2,614,712 + DvMF_2098 0.17 -1.0 2,614,795 + DvMF_2098 0.23 -0.5 2,614,803 - DvMF_2098 0.23 -2.3 2,614,803 - DvMF_2098 0.23 -0.7 2,615,104 + DvMF_2098 0.45 -0.7 2,615,137 - DvMF_2098 0.47 -0.7 2,615,199 + DvMF_2098 0.51 -1.5 2,615,505 + DvMF_2098 0.73 -1.0 2,615,540 - DvMF_2098 0.76 -0.3 2,615,570 + DvMF_2098 0.78 -0.7 2,615,674 + DvMF_2098 0.85 -0.8 2,615,682 - DvMF_2098 0.86 -0.8 2,615,738 - DvMF_2098 0.90 -0.3 2,615,805 + +0.2 2,616,247 - DvMF_2099 0.18 -2.0 2,616,252 - DvMF_2099 0.18 -2.6 2,616,252 - DvMF_2099 0.18 -1.5 2,616,432 - DvMF_2099 0.31 -2.7 2,616,666 + DvMF_2099 0.49 -1.5 2,616,715 + DvMF_2099 0.53 -2.0 2,616,723 - DvMF_2099 0.53 -2.3 2,616,735 + DvMF_2099 0.54 -3.1
Or see this region's nucleotide sequence