Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1987 and DvMF_1988 are separated by 133 nucleotides DvMF_1988 and DvMF_1989 are separated by 334 nucleotides DvMF_1989 and DvMF_1990 are separated by 400 nucleotides
DvMF_1987: DvMF_1987 - Pyruvate, water dikinase (RefSeq), at 2,459,260 to 2,462,016
_1987
DvMF_1988: DvMF_1988 - response regulator receiver protein (RefSeq), at 2,462,150 to 2,462,509
_1988
DvMF_1989: DvMF_1989 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,462,844 to 2,464,544
_1989
DvMF_1990: DvMF_1990 - Pyruvate, water dikinase (RefSeq), at 2,464,945 to 2,467,740
_1990
Position (kb)
2462
2463
2464
2465 Strain fitness (log2 ratio)
-2
-1
0
1 at 2461.949 kb on + strand at 2461.962 kb on - strand at 2462.431 kb on + strand, within DvMF_1988 at 2462.439 kb on - strand, within DvMF_1988 at 2462.692 kb on + strand at 2462.757 kb on - strand at 2462.814 kb on - strand at 2462.861 kb on + strand at 2462.868 kb on - strand at 2463.030 kb on - strand, within DvMF_1989 at 2463.030 kb on - strand, within DvMF_1989 at 2463.141 kb on - strand, within DvMF_1989 at 2463.174 kb on - strand, within DvMF_1989 at 2463.267 kb on + strand, within DvMF_1989 at 2463.314 kb on + strand, within DvMF_1989 at 2463.608 kb on + strand, within DvMF_1989 at 2463.627 kb on - strand, within DvMF_1989 at 2463.836 kb on - strand, within DvMF_1989 at 2463.845 kb on - strand, within DvMF_1989 at 2463.882 kb on - strand, within DvMF_1989 at 2463.987 kb on + strand, within DvMF_1989 at 2464.033 kb on + strand, within DvMF_1989 at 2464.041 kb on - strand, within DvMF_1989 at 2464.203 kb on + strand, within DvMF_1989 at 2464.291 kb on + strand, within DvMF_1989 at 2464.313 kb on + strand, within DvMF_1989 at 2464.318 kb on + strand, within DvMF_1989 at 2464.370 kb on - strand, within DvMF_1989 at 2464.650 kb on + strand at 2465.038 kb on - strand at 2465.391 kb on + strand, within DvMF_1990
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 2,461,949 + -0.7 2,461,962 - -0.3 2,462,431 + DvMF_1988 0.78 -2.3 2,462,439 - DvMF_1988 0.80 -0.8 2,462,692 + -0.6 2,462,757 - +0.1 2,462,814 - -0.7 2,462,861 + -0.2 2,462,868 - -0.5 2,463,030 - DvMF_1989 0.11 -1.3 2,463,030 - DvMF_1989 0.11 -1.3 2,463,141 - DvMF_1989 0.17 -0.5 2,463,174 - DvMF_1989 0.19 -0.6 2,463,267 + DvMF_1989 0.25 -1.3 2,463,314 + DvMF_1989 0.28 -1.2 2,463,608 + DvMF_1989 0.45 +0.6 2,463,627 - DvMF_1989 0.46 -1.2 2,463,836 - DvMF_1989 0.58 -0.3 2,463,845 - DvMF_1989 0.59 -0.9 2,463,882 - DvMF_1989 0.61 -1.1 2,463,987 + DvMF_1989 0.67 -0.7 2,464,033 + DvMF_1989 0.70 +0.4 2,464,041 - DvMF_1989 0.70 +0.1 2,464,203 + DvMF_1989 0.80 -1.1 2,464,291 + DvMF_1989 0.85 +0.6 2,464,313 + DvMF_1989 0.86 -0.0 2,464,318 + DvMF_1989 0.87 -0.8 2,464,370 - DvMF_1989 0.90 -0.1 2,464,650 + +0.1 2,465,038 - -0.6 2,465,391 + DvMF_1990 0.16 -0.6
Or see this region's nucleotide sequence