Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1959

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1957 and potC overlap by 1 nucleotidespotC and DvMF_1959 are separated by 1 nucleotidesDvMF_1959 and potA overlap by 14 nucleotides DvMF_1957: DvMF_1957 - extracellular solute-binding protein family 1 (RefSeq), at 2,418,778 to 2,419,854 _1957 DvMF_1958: potC - spermidine/putrescine ABC transporter membrane protein (RefSeq), at 2,419,854 to 2,420,654 potC DvMF_1959: DvMF_1959 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,420,656 to 2,421,624 _1959 DvMF_1960: potA - putrescine/spermidine ABC transporter ATPase protein (RefSeq), at 2,421,611 to 2,422,810 potA Position (kb) 2420 2421 2422Strain fitness (log2 ratio) -3 -2 -1 0 1at 2419.663 kb on - strand, within DvMF_1957at 2419.898 kb on + strandat 2419.906 kb on - strandat 2420.043 kb on - strand, within potCat 2420.144 kb on - strand, within potCat 2420.205 kb on + strand, within potCat 2420.210 kb on + strand, within potCat 2420.402 kb on - strand, within potCat 2420.454 kb on + strand, within potCat 2420.555 kb on + strand, within potCat 2420.589 kb on - strandat 2420.589 kb on - strandat 2420.595 kb on + strandat 2420.603 kb on - strandat 2420.656 kb on - strandat 2420.668 kb on - strandat 2420.787 kb on + strand, within DvMF_1959at 2420.850 kb on - strand, within DvMF_1959at 2421.324 kb on + strand, within DvMF_1959at 2421.336 kb on + strand, within DvMF_1959at 2421.497 kb on - strand, within DvMF_1959at 2421.608 kb on + strandat 2421.608 kb on + strandat 2421.758 kb on - strand, within potAat 2422.062 kb on + strand, within potAat 2422.357 kb on - strand, within potAat 2422.473 kb on - strand, within potAat 2422.551 kb on + strand, within potAat 2422.579 kb on + strand, within potA

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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2,419,663 - DvMF_1957 0.82 -0.5
2,419,898 + -0.6
2,419,906 - -1.0
2,420,043 - potC DvMF_1958 0.24 -0.6
2,420,144 - potC DvMF_1958 0.36 +0.3
2,420,205 + potC DvMF_1958 0.44 -0.7
2,420,210 + potC DvMF_1958 0.44 -0.6
2,420,402 - potC DvMF_1958 0.68 -0.9
2,420,454 + potC DvMF_1958 0.75 -0.6
2,420,555 + potC DvMF_1958 0.88 -0.7
2,420,589 - +0.2
2,420,589 - -0.7
2,420,595 + -0.7
2,420,603 - -2.9
2,420,656 - -1.4
2,420,668 - -0.9
2,420,787 + DvMF_1959 0.14 -1.3
2,420,850 - DvMF_1959 0.20 -0.4
2,421,324 + DvMF_1959 0.69 -1.7
2,421,336 + DvMF_1959 0.70 -0.6
2,421,497 - DvMF_1959 0.87 -0.9
2,421,608 + -0.5
2,421,608 + +0.1
2,421,758 - potA DvMF_1960 0.12 -1.7
2,422,062 + potA DvMF_1960 0.38 -1.5
2,422,357 - potA DvMF_1960 0.62 -0.6
2,422,473 - potA DvMF_1960 0.72 -0.7
2,422,551 + potA DvMF_1960 0.78 -0.7
2,422,579 + potA DvMF_1960 0.81 -0.8

Or see this region's nucleotide sequence