Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1911

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1909 and DvMF_1910 are separated by 25 nucleotidesDvMF_1910 and DvMF_1911 are separated by 174 nucleotidesDvMF_1911 and DvMF_1912 are separated by 157 nucleotides DvMF_1909: DvMF_1909 - CDP-glucose 4,6-dehydratase (RefSeq), at 2,353,476 to 2,354,585 _1909 DvMF_1910: DvMF_1910 - polysaccharide biosynthesis domain-containing protein (RefSeq), at 2,354,611 to 2,355,060 _1910 DvMF_1911: DvMF_1911 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,355,235 to 2,356,368 _1911 DvMF_1912: DvMF_1912 - glycosyl transferase family 2 (RefSeq), at 2,356,526 to 2,357,554 _1912 Position (kb) 2355 2356 2357Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8at 2354.299 kb on + strand, within DvMF_1909at 2354.616 kb on - strandat 2355.096 kb on + strandat 2355.374 kb on + strand, within DvMF_1911at 2355.661 kb on + strand, within DvMF_1911at 2355.661 kb on + strand, within DvMF_1911at 2356.086 kb on + strand, within DvMF_1911at 2356.091 kb on + strand, within DvMF_1911at 2356.187 kb on - strand, within DvMF_1911at 2356.703 kb on - strand, within DvMF_1912at 2356.916 kb on + strand, within DvMF_1912at 2356.999 kb on + strand, within DvMF_1912at 2357.337 kb on - strand, within DvMF_1912

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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2,354,299 + DvMF_1909 0.74 +7.5
2,354,616 - +4.3
2,355,096 + -0.6
2,355,374 + DvMF_1911 0.12 +7.7
2,355,661 + DvMF_1911 0.38 +6.8
2,355,661 + DvMF_1911 0.38 +6.5
2,356,086 + DvMF_1911 0.75 +7.7
2,356,091 + DvMF_1911 0.75 +7.2
2,356,187 - DvMF_1911 0.84 +7.8
2,356,703 - DvMF_1912 0.17 +7.6
2,356,916 + DvMF_1912 0.38 +7.9
2,356,999 + DvMF_1912 0.46 +7.5
2,357,337 - DvMF_1912 0.79 +7.9

Or see this region's nucleotide sequence