Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1874

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1873 and DvMF_1874 are separated by 364 nucleotidesDvMF_1874 and DvMF_1875 overlap by 4 nucleotides DvMF_1873: DvMF_1873 - Radical SAM domain protein (RefSeq), at 2,300,700 to 2,302,052 _1873 DvMF_1874: DvMF_1874 - hypothetical protein (RefSeq), at 2,302,417 to 2,304,678 _1874 DvMF_1875: DvMF_1875 - multi-sensor hybrid histidine kinase (RefSeq), at 2,304,675 to 2,306,792 _1875 Position (kb) 2302 2303 2304 2305Strain fitness (log2 ratio) -2 -1 0 1at 2301.546 kb on - strand, within DvMF_1873at 2301.654 kb on + strand, within DvMF_1873at 2301.839 kb on + strand, within DvMF_1873at 2301.841 kb on + strand, within DvMF_1873at 2301.899 kb on + strand, within DvMF_1873at 2302.036 kb on - strandat 2303.232 kb on - strand, within DvMF_1874at 2304.744 kb on + strandat 2305.148 kb on - strand, within DvMF_1875at 2305.150 kb on + strand, within DvMF_1875at 2305.163 kb on - strand, within DvMF_1875at 2305.283 kb on + strand, within DvMF_1875at 2305.329 kb on - strand, within DvMF_1875at 2305.444 kb on - strand, within DvMF_1875

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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2,301,546 - DvMF_1873 0.63 -1.6
2,301,654 + DvMF_1873 0.71 -2.0
2,301,839 + DvMF_1873 0.84 -0.5
2,301,841 + DvMF_1873 0.84 -1.0
2,301,899 + DvMF_1873 0.89 -0.3
2,302,036 - -1.0
2,303,232 - DvMF_1874 0.36 +0.6
2,304,744 + +0.5
2,305,148 - DvMF_1875 0.22 +0.5
2,305,150 + DvMF_1875 0.22 -0.7
2,305,163 - DvMF_1875 0.23 -0.5
2,305,283 + DvMF_1875 0.29 -1.2
2,305,329 - DvMF_1875 0.31 -1.4
2,305,444 - DvMF_1875 0.36 -1.2

Or see this region's nucleotide sequence