Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1859

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1858 and DvMF_1859 are separated by 5 nucleotidesDvMF_1859 and DvMF_1860 are separated by 670 nucleotides DvMF_1858: DvMF_1858 - multi-sensor hybrid histidine kinase (RefSeq), at 2,272,085 to 2,275,660 _1858 DvMF_1859: DvMF_1859 - putative two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 2,275,666 to 2,277,165 _1859 DvMF_1860: DvMF_1860 - pyruvate flavodoxin/ferredoxin oxidoreductase domain protein (RefSeq), at 2,277,836 to 2,281,483 _1860 Position (kb) 2275 2276 2277 2278Strain fitness (log2 ratio) -1 0 1 2at 2275.001 kb on - strand, within DvMF_1858at 2275.003 kb on + strand, within DvMF_1858at 2275.134 kb on + strand, within DvMF_1858at 2275.335 kb on - strandat 2275.360 kb on + strandat 2275.368 kb on - strandat 2275.473 kb on + strandat 2275.481 kb on - strandat 2275.994 kb on + strand, within DvMF_1859at 2276.068 kb on + strand, within DvMF_1859at 2276.519 kb on + strand, within DvMF_1859at 2276.940 kb on + strand, within DvMF_1859at 2276.941 kb on - strand, within DvMF_1859at 2277.128 kb on + strandat 2277.128 kb on + strandat 2277.134 kb on - strandat 2277.136 kb on - strandat 2277.650 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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2,275,001 - DvMF_1858 0.82 +0.3
2,275,003 + DvMF_1858 0.82 +2.3
2,275,134 + DvMF_1858 0.85 +0.8
2,275,335 - -1.0
2,275,360 + +1.4
2,275,368 - +0.5
2,275,473 + -0.1
2,275,481 - -0.4
2,275,994 + DvMF_1859 0.22 +2.5
2,276,068 + DvMF_1859 0.27 +0.4
2,276,519 + DvMF_1859 0.57 +2.3
2,276,940 + DvMF_1859 0.85 -0.8
2,276,941 - DvMF_1859 0.85 -1.7
2,277,128 + +1.4
2,277,128 + +0.1
2,277,134 - -0.6
2,277,136 - +0.4
2,277,650 - +0.7

Or see this region's nucleotide sequence