Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1820 and DvMF_1821 are separated by 87 nucleotides DvMF_1821 and DvMF_1822 are separated by 199 nucleotides DvMF_1822 and DvMF_1823 are separated by 116 nucleotides DvMF_1823 and DvMF_1824 are separated by 12 nucleotides
DvMF_1820: DvMF_1820 - hypothetical protein (RefSeq), at 2,221,896 to 2,223,434
_1820
DvMF_1821: DvMF_1821 - Tir chaperone family protein (RefSeq), at 2,223,522 to 2,224,004
_1821
DvMF_1822: DvMF_1822 - aminotransferase class I and II (RefSeq), at 2,224,204 to 2,225,421
_1822
DvMF_1823: DvMF_1823 - hypothetical protein (RefSeq), at 2,225,538 to 2,226,068
_1823
DvMF_1824: DvMF_1824 - metal dependent phosphohydrolase (RefSeq), at 2,226,081 to 2,227,391
_1824
Position (kb)
2224
2225
2226 Strain fitness (log2 ratio)
-2
-1
0
1 at 2223.220 kb on + strand, within DvMF_1820 at 2223.277 kb on + strand, within DvMF_1820 at 2223.472 kb on + strand at 2223.480 kb on - strand at 2223.480 kb on - strand at 2223.655 kb on + strand, within DvMF_1821 at 2223.900 kb on + strand, within DvMF_1821 at 2224.072 kb on + strand at 2224.415 kb on - strand, within DvMF_1822 at 2224.704 kb on + strand, within DvMF_1822 at 2224.760 kb on - strand, within DvMF_1822 at 2224.803 kb on - strand, within DvMF_1822 at 2224.803 kb on - strand, within DvMF_1822 at 2224.872 kb on - strand, within DvMF_1822 at 2224.894 kb on + strand, within DvMF_1822 at 2224.902 kb on - strand, within DvMF_1822 at 2224.957 kb on + strand, within DvMF_1822 at 2225.089 kb on - strand, within DvMF_1822 at 2225.499 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 2,223,220 + DvMF_1820 0.86 -0.4 2,223,277 + DvMF_1820 0.90 -0.3 2,223,472 + -0.8 2,223,480 - -1.3 2,223,480 - -0.4 2,223,655 + DvMF_1821 0.28 -0.4 2,223,900 + DvMF_1821 0.78 -0.3 2,224,072 + -0.5 2,224,415 - DvMF_1822 0.17 -1.3 2,224,704 + DvMF_1822 0.41 -1.5 2,224,760 - DvMF_1822 0.46 -0.5 2,224,803 - DvMF_1822 0.49 -0.2 2,224,803 - DvMF_1822 0.49 -1.9 2,224,872 - DvMF_1822 0.55 -0.5 2,224,894 + DvMF_1822 0.57 -0.4 2,224,902 - DvMF_1822 0.57 -0.9 2,224,957 + DvMF_1822 0.62 -1.3 2,225,089 - DvMF_1822 0.73 -0.4 2,225,499 + -0.8
Or see this region's nucleotide sequence