Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1730

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1729 and DvMF_1730 are separated by 242 nucleotidesDvMF_1730 and DvMF_1731 are separated by 330 nucleotidesDvMF_1731 and DvMF_1732 overlap by 4 nucleotides DvMF_1729: DvMF_1729 - DNA mismatch repair protein MutL (RefSeq), at 2,112,107 to 2,114,398 _1729 DvMF_1730: DvMF_1730 - multi-sensor signal transduction histidine kinase (RefSeq), at 2,114,641 to 2,116,164 _1730 DvMF_1731: DvMF_1731 - cytochrome c class III (RefSeq), at 2,116,495 to 2,116,899 _1731 DvMF_1732: DvMF_1732 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 2,116,896 to 2,117,864 _1732 Position (kb) 2114 2115 2116 2117Strain fitness (log2 ratio) -2 -1 0 1at 2113.740 kb on - strand, within DvMF_1729at 2113.864 kb on - strand, within DvMF_1729at 2113.885 kb on + strand, within DvMF_1729at 2113.898 kb on - strand, within DvMF_1729at 2114.010 kb on - strand, within DvMF_1729at 2114.130 kb on - strand, within DvMF_1729at 2114.149 kb on - strand, within DvMF_1729at 2114.352 kb on + strandat 2115.126 kb on + strand, within DvMF_1730at 2115.205 kb on + strand, within DvMF_1730at 2115.205 kb on + strand, within DvMF_1730at 2115.205 kb on + strand, within DvMF_1730at 2115.205 kb on + strand, within DvMF_1730at 2115.213 kb on - strand, within DvMF_1730at 2115.213 kb on - strand, within DvMF_1730at 2115.223 kb on + strand, within DvMF_1730at 2115.402 kb on - strand, within DvMF_1730at 2115.504 kb on + strand, within DvMF_1730at 2115.681 kb on - strand, within DvMF_1730at 2115.766 kb on - strand, within DvMF_1730at 2115.766 kb on - strand, within DvMF_1730at 2115.922 kb on - strand, within DvMF_1730at 2116.113 kb on + strandat 2116.701 kb on - strand, within DvMF_1731at 2116.711 kb on - strand, within DvMF_1731at 2116.725 kb on - strand, within DvMF_1731at 2117.132 kb on - strand, within DvMF_1732

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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2,113,740 - DvMF_1729 0.71 -0.3
2,113,864 - DvMF_1729 0.77 -1.3
2,113,885 + DvMF_1729 0.78 +0.9
2,113,898 - DvMF_1729 0.78 -0.2
2,114,010 - DvMF_1729 0.83 -0.1
2,114,130 - DvMF_1729 0.88 -0.2
2,114,149 - DvMF_1729 0.89 -1.1
2,114,352 + +1.0
2,115,126 + DvMF_1730 0.32 -0.0
2,115,205 + DvMF_1730 0.37 -1.5
2,115,205 + DvMF_1730 0.37 -0.5
2,115,205 + DvMF_1730 0.37 -0.4
2,115,205 + DvMF_1730 0.37 -0.5
2,115,213 - DvMF_1730 0.38 -1.8
2,115,213 - DvMF_1730 0.38 -1.7
2,115,223 + DvMF_1730 0.38 -0.5
2,115,402 - DvMF_1730 0.50 -0.8
2,115,504 + DvMF_1730 0.57 -0.9
2,115,681 - DvMF_1730 0.68 -0.4
2,115,766 - DvMF_1730 0.74 -1.1
2,115,766 - DvMF_1730 0.74 -1.4
2,115,922 - DvMF_1730 0.84 -0.9
2,116,113 + -0.7
2,116,701 - DvMF_1731 0.51 +0.3
2,116,711 - DvMF_1731 0.53 -1.0
2,116,725 - DvMF_1731 0.57 -0.7
2,117,132 - DvMF_1732 0.24 -1.8

Or see this region's nucleotide sequence