Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1718

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntargC and DvMF_1718 are separated by 270 nucleotidesDvMF_1718 and DvMF_1719 are separated by 369 nucleotides DvMF_1717: argC - N-acetyl-gamma-glutamyl-phosphate reductase (RefSeq), at 2,097,794 to 2,098,846 argC DvMF_1718: DvMF_1718 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 2,099,117 to 2,101,108 _1718 DvMF_1719: DvMF_1719 - metal dependent phosphohydrolase (RefSeq), at 2,101,478 to 2,102,686 _1719 Position (kb) 2099 2100 2101 2102Strain fitness (log2 ratio) -1 0 1at 2098.132 kb on + strand, within argCat 2098.143 kb on + strand, within argCat 2098.440 kb on + strand, within argCat 2098.460 kb on + strand, within argCat 2098.487 kb on - strand, within argCat 2098.507 kb on + strand, within argCat 2098.679 kb on - strand, within argCat 2098.893 kb on - strandat 2099.016 kb on - strandat 2099.159 kb on + strandat 2099.367 kb on + strand, within DvMF_1718at 2099.439 kb on + strand, within DvMF_1718at 2099.604 kb on + strand, within DvMF_1718at 2099.895 kb on + strand, within DvMF_1718at 2099.903 kb on - strand, within DvMF_1718at 2099.985 kb on + strand, within DvMF_1718at 2100.003 kb on - strand, within DvMF_1718at 2100.191 kb on + strand, within DvMF_1718at 2100.193 kb on + strand, within DvMF_1718at 2100.753 kb on + strand, within DvMF_1718at 2100.802 kb on - strand, within DvMF_1718at 2101.017 kb on - strandat 2101.476 kb on + strandat 2101.476 kb on + strandat 2101.484 kb on - strandat 2101.525 kb on + strandat 2101.533 kb on - strandat 2101.770 kb on + strand, within DvMF_1719at 2101.796 kb on + strand, within DvMF_1719at 2101.804 kb on - strand, within DvMF_1719at 2101.817 kb on - strand, within DvMF_1719at 2101.837 kb on - strand, within DvMF_1719at 2101.847 kb on - strand, within DvMF_1719at 2101.854 kb on - strand, within DvMF_1719at 2101.990 kb on + strand, within DvMF_1719

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
remove
2,098,132 + argC DvMF_1717 0.32 -0.5
2,098,143 + argC DvMF_1717 0.33 -1.2
2,098,440 + argC DvMF_1717 0.61 +0.1
2,098,460 + argC DvMF_1717 0.63 -0.4
2,098,487 - argC DvMF_1717 0.66 -0.6
2,098,507 + argC DvMF_1717 0.68 -1.2
2,098,679 - argC DvMF_1717 0.84 -1.3
2,098,893 - -0.6
2,099,016 - -1.6
2,099,159 + -0.0
2,099,367 + DvMF_1718 0.13 -0.3
2,099,439 + DvMF_1718 0.16 -0.5
2,099,604 + DvMF_1718 0.24 -1.0
2,099,895 + DvMF_1718 0.39 +1.0
2,099,903 - DvMF_1718 0.39 -0.5
2,099,985 + DvMF_1718 0.44 -0.7
2,100,003 - DvMF_1718 0.44 -0.4
2,100,191 + DvMF_1718 0.54 -0.7
2,100,193 + DvMF_1718 0.54 -0.4
2,100,753 + DvMF_1718 0.82 +0.7
2,100,802 - DvMF_1718 0.85 -0.1
2,101,017 - -0.5
2,101,476 + -0.7
2,101,476 + -0.3
2,101,484 - +0.1
2,101,525 + -1.5
2,101,533 - -0.2
2,101,770 + DvMF_1719 0.24 -0.1
2,101,796 + DvMF_1719 0.26 +0.2
2,101,804 - DvMF_1719 0.27 +0.0
2,101,817 - DvMF_1719 0.28 -0.5
2,101,837 - DvMF_1719 0.30 -0.8
2,101,847 - DvMF_1719 0.31 -0.9
2,101,854 - DvMF_1719 0.31 -0.7
2,101,990 + DvMF_1719 0.42 -0.8

Or see this region's nucleotide sequence