Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1708 and DvMF_1709 are separated by 105 nucleotides DvMF_1709 and DvMF_1710 are separated by 27 nucleotides DvMF_1710 and DvMF_1711 are separated by 316 nucleotides
DvMF_1708: DvMF_1708 - transcriptional regulator, Crp/Fnr family (RefSeq), at 2,086,678 to 2,087,367
_1708
DvMF_1709: DvMF_1709 - 4Fe-4S ferredoxin, iron-sulfur binding domain protein (RefSeq), at 2,087,473 to 2,087,829
_1709
DvMF_1710: DvMF_1710 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein (RefSeq), at 2,087,857 to 2,089,641
_1710
DvMF_1711: DvMF_1711 - protein of unknown function DUF81 (RefSeq), at 2,089,958 to 2,091,022
_1711
Position (kb)
2087
2088
2089
2090 Strain fitness (log2 ratio)
-2
-1
0
1 at 2086.937 kb on - strand, within DvMF_1708 at 2086.992 kb on + strand, within DvMF_1708 at 2086.994 kb on - strand, within DvMF_1708 at 2087.459 kb on + strand at 2087.477 kb on - strand at 2087.601 kb on - strand, within DvMF_1709 at 2087.606 kb on + strand, within DvMF_1709 at 2087.606 kb on + strand, within DvMF_1709 at 2087.766 kb on - strand, within DvMF_1709 at 2087.803 kb on - strand at 2087.854 kb on + strand at 2087.902 kb on + strand at 2088.060 kb on + strand, within DvMF_1710 at 2088.070 kb on + strand, within DvMF_1710 at 2088.090 kb on + strand, within DvMF_1710 at 2088.090 kb on + strand, within DvMF_1710 at 2088.166 kb on + strand, within DvMF_1710 at 2088.794 kb on + strand, within DvMF_1710 at 2088.816 kb on + strand, within DvMF_1710 at 2088.838 kb on + strand, within DvMF_1710 at 2088.875 kb on + strand, within DvMF_1710 at 2088.893 kb on - strand, within DvMF_1710 at 2088.964 kb on - strand, within DvMF_1710 at 2089.149 kb on - strand, within DvMF_1710 at 2089.194 kb on + strand, within DvMF_1710 at 2089.195 kb on - strand, within DvMF_1710 at 2089.595 kb on - strand at 2089.860 kb on - strand at 2089.944 kb on + strand at 2090.009 kb on + strand at 2090.247 kb on - strand, within DvMF_1711 at 2090.364 kb on + strand, within DvMF_1711 at 2090.377 kb on - strand, within DvMF_1711
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 2,086,937 - DvMF_1708 0.38 -0.4 2,086,992 + DvMF_1708 0.46 -0.6 2,086,994 - DvMF_1708 0.46 -0.3 2,087,459 + -1.0 2,087,477 - -0.3 2,087,601 - DvMF_1709 0.36 -2.2 2,087,606 + DvMF_1709 0.37 -0.6 2,087,606 + DvMF_1709 0.37 -1.3 2,087,766 - DvMF_1709 0.82 -0.3 2,087,803 - -0.4 2,087,854 + -0.4 2,087,902 + -0.6 2,088,060 + DvMF_1710 0.11 -0.8 2,088,070 + DvMF_1710 0.12 -0.9 2,088,090 + DvMF_1710 0.13 -0.3 2,088,090 + DvMF_1710 0.13 -2.2 2,088,166 + DvMF_1710 0.17 -0.6 2,088,794 + DvMF_1710 0.52 -0.8 2,088,816 + DvMF_1710 0.54 -0.8 2,088,838 + DvMF_1710 0.55 -1.0 2,088,875 + DvMF_1710 0.57 -0.8 2,088,893 - DvMF_1710 0.58 -0.9 2,088,964 - DvMF_1710 0.62 -1.1 2,089,149 - DvMF_1710 0.72 -0.6 2,089,194 + DvMF_1710 0.75 -0.9 2,089,195 - DvMF_1710 0.75 -0.2 2,089,595 - -1.3 2,089,860 - -0.6 2,089,944 + -0.3 2,090,009 + +0.9 2,090,247 - DvMF_1711 0.27 -0.7 2,090,364 + DvMF_1711 0.38 -0.4 2,090,377 - DvMF_1711 0.39 -0.5
Or see this region's nucleotide sequence