Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1566

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1565 and DvMF_1566 are separated by 140 nucleotidesDvMF_1566 and DvMF_1567 are separated by 124 nucleotides DvMF_1565: DvMF_1565 - hypothetical protein (RefSeq), at 1,930,611 to 1,931,303 _1565 DvMF_1566: DvMF_1566 - hypothetical protein (RefSeq), at 1,931,444 to 1,933,318 _1566 DvMF_1567: DvMF_1567 - D-lactate dehydrogenase (cytochrome) (RefSeq), at 1,933,443 to 1,934,867 _1567 Position (kb) 1931 1932 1933 1934Strain fitness (log2 ratio) -2 -1 0 1at 1930.736 kb on + strand, within DvMF_1565at 1930.783 kb on + strand, within DvMF_1565at 1930.793 kb on + strand, within DvMF_1565at 1930.801 kb on - strand, within DvMF_1565at 1931.178 kb on + strand, within DvMF_1565at 1931.191 kb on - strand, within DvMF_1565at 1931.229 kb on + strand, within DvMF_1565at 1931.335 kb on + strandat 1931.644 kb on - strand, within DvMF_1566at 1931.691 kb on + strand, within DvMF_1566at 1931.715 kb on - strand, within DvMF_1566at 1932.392 kb on - strand, within DvMF_1566at 1932.768 kb on - strand, within DvMF_1566at 1933.440 kb on + strandat 1933.635 kb on - strand, within DvMF_1567at 1933.707 kb on + strand, within DvMF_1567at 1933.777 kb on + strand, within DvMF_1567at 1933.804 kb on + strand, within DvMF_1567at 1933.804 kb on + strand, within DvMF_1567at 1934.082 kb on - strand, within DvMF_1567at 1934.149 kb on + strand, within DvMF_1567

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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1,930,736 + DvMF_1565 0.18 -1.2
1,930,783 + DvMF_1565 0.25 -1.3
1,930,793 + DvMF_1565 0.26 -0.8
1,930,801 - DvMF_1565 0.27 -1.1
1,931,178 + DvMF_1565 0.82 -1.3
1,931,191 - DvMF_1565 0.84 +0.3
1,931,229 + DvMF_1565 0.89 -0.8
1,931,335 + -0.3
1,931,644 - DvMF_1566 0.11 -0.8
1,931,691 + DvMF_1566 0.13 -0.8
1,931,715 - DvMF_1566 0.14 -1.0
1,932,392 - DvMF_1566 0.51 -1.2
1,932,768 - DvMF_1566 0.71 -1.4
1,933,440 + -0.4
1,933,635 - DvMF_1567 0.13 -0.3
1,933,707 + DvMF_1567 0.19 -0.4
1,933,777 + DvMF_1567 0.23 -0.5
1,933,804 + DvMF_1567 0.25 -0.9
1,933,804 + DvMF_1567 0.25 -0.3
1,934,082 - DvMF_1567 0.45 -0.2
1,934,149 + DvMF_1567 0.50 -1.8

Or see this region's nucleotide sequence