Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1508 and DvMF_1509 are separated by 95 nucleotides DvMF_1509 and DvMF_1510 are separated by 384 nucleotides DvMF_1510 and DvMF_1511 are separated by 206 nucleotides
DvMF_1508: DvMF_1508 - hypothetical protein (RefSeq), at 1,860,298 to 1,860,729
_1508
DvMF_1509: DvMF_1509 - hypothetical protein (RefSeq), at 1,860,825 to 1,861,259
_1509
DvMF_1510: DvMF_1510 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,861,644 to 1,863,056
_1510
DvMF_1511: DvMF_1511 - hypothetical protein (RefSeq), at 1,863,263 to 1,864,009
_1511
Position (kb)
1861
1862
1863
1864 Strain fitness (log2 ratio)
-1
0
1 at 1860.744 kb on - strand at 1860.755 kb on + strand at 1860.755 kb on + strand at 1860.763 kb on - strand at 1860.764 kb on - strand at 1860.822 kb on + strand at 1860.962 kb on + strand, within DvMF_1509 at 1861.099 kb on - strand, within DvMF_1509 at 1861.593 kb on - strand at 1861.643 kb on - strand at 1861.735 kb on - strand at 1861.935 kb on - strand, within DvMF_1510 at 1862.142 kb on - strand, within DvMF_1510 at 1862.223 kb on + strand, within DvMF_1510 at 1862.238 kb on - strand, within DvMF_1510 at 1862.259 kb on + strand, within DvMF_1510 at 1862.286 kb on - strand, within DvMF_1510 at 1862.305 kb on - strand, within DvMF_1510 at 1862.437 kb on + strand, within DvMF_1510 at 1862.460 kb on - strand, within DvMF_1510 at 1862.491 kb on - strand, within DvMF_1510 at 1862.540 kb on + strand, within DvMF_1510 at 1862.610 kb on - strand, within DvMF_1510 at 1862.686 kb on - strand, within DvMF_1510 at 1862.938 kb on + strand at 1863.481 kb on + strand, within DvMF_1511 at 1863.631 kb on - strand, within DvMF_1511 at 1863.678 kb on + strand, within DvMF_1511 at 1863.686 kb on - strand, within DvMF_1511 at 1863.817 kb on + strand, within DvMF_1511 at 1863.825 kb on - strand, within DvMF_1511
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 1,860,744 - +0.6 1,860,755 + -0.2 1,860,755 + -0.6 1,860,763 - +0.6 1,860,764 - +0.1 1,860,822 + -0.4 1,860,962 + DvMF_1509 0.31 +0.0 1,861,099 - DvMF_1509 0.63 -1.2 1,861,593 - +0.2 1,861,643 - -0.3 1,861,735 - +0.7 1,861,935 - DvMF_1510 0.21 +0.7 1,862,142 - DvMF_1510 0.35 +1.0 1,862,223 + DvMF_1510 0.41 +0.7 1,862,238 - DvMF_1510 0.42 +0.1 1,862,259 + DvMF_1510 0.44 +0.4 1,862,286 - DvMF_1510 0.45 +0.4 1,862,305 - DvMF_1510 0.47 +0.7 1,862,437 + DvMF_1510 0.56 +0.3 1,862,460 - DvMF_1510 0.58 +1.1 1,862,491 - DvMF_1510 0.60 +0.6 1,862,540 + DvMF_1510 0.63 +0.5 1,862,610 - DvMF_1510 0.68 +0.5 1,862,686 - DvMF_1510 0.74 +0.7 1,862,938 + +0.8 1,863,481 + DvMF_1511 0.29 -0.8 1,863,631 - DvMF_1511 0.49 -0.4 1,863,678 + DvMF_1511 0.56 -0.7 1,863,686 - DvMF_1511 0.57 -1.4 1,863,817 + DvMF_1511 0.74 -0.0 1,863,825 - DvMF_1511 0.75 +0.5
Or see this region's nucleotide sequence