Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1262
Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Vancomycin 0.5 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,559,867 | + | -2.0 | |||
1,559,881 | - | -0.8 | |||
1,559,935 | + | -0.7 | |||
1,559,973 | + | DvMF_1262 | 0.16 | -1.3 | |
1,559,973 | + | DvMF_1262 | 0.16 | -0.8 | |
1,559,981 | - | DvMF_1262 | 0.18 | -0.6 | |
1,559,981 | - | DvMF_1262 | 0.18 | -0.5 | |
1,560,007 | + | DvMF_1262 | 0.24 | -0.7 | |
1,560,199 | + | DvMF_1262 | 0.69 | -1.4 | |
1,560,222 | - | DvMF_1262 | 0.75 | -0.7 | |
1,560,224 | + | DvMF_1262 | 0.75 | -0.5 | |
1,560,491 | - | DvMF_1263 | 0.60 | +0.7 | |
1,560,510 | + | DvMF_1263 | 0.67 | -1.2 | |
1,560,510 | + | DvMF_1263 | 0.67 | -0.9 | |
1,560,510 | + | DvMF_1263 | 0.67 | -1.1 | |
1,560,518 | - | DvMF_1263 | 0.70 | -2.1 | |
1,560,566 | + | DvMF_1263 | 0.87 | -1.4 | |
1,560,792 | + | -1.3 | |||
1,560,811 | - | -2.0 | |||
1,560,979 | + | DvMF_1264 | 0.16 | -0.9 | |
1,561,056 | - | DvMF_1264 | 0.20 | -0.6 | |
1,561,261 | + | DvMF_1264 | 0.29 | +0.2 | |
1,561,261 | + | DvMF_1264 | 0.29 | +1.9 | |
1,561,261 | + | DvMF_1264 | 0.29 | -0.7 | |
1,561,261 | + | DvMF_1264 | 0.29 | +0.2 | |
1,561,269 | - | DvMF_1264 | 0.29 | -1.6 | |
1,561,269 | - | DvMF_1264 | 0.29 | +0.9 | |
1,561,269 | - | DvMF_1264 | 0.29 | +0.4 | |
1,561,269 | - | DvMF_1264 | 0.29 | -0.9 | |
1,561,273 | + | DvMF_1264 | 0.29 | +0.5 |
Or see this region's nucleotide sequence