Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1260 and DvMF_1261 are separated by 316 nucleotides DvMF_1261 and DvMF_1262 are separated by 264 nucleotides DvMF_1262 and DvMF_1263 overlap by 4 nucleotides DvMF_1263 and DvMF_1264 are separated by 27 nucleotides
DvMF_1260: DvMF_1260 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,557,254 to 1,558,612
_1260
DvMF_1261: DvMF_1261 - putative phage repressor (RefSeq), at 1,558,929 to 1,559,639
_1261
DvMF_1262: DvMF_1262 - hypothetical protein (RefSeq), at 1,559,904 to 1,560,329
_1262
DvMF_1263: DvMF_1263 - hypothetical protein (RefSeq), at 1,560,326 to 1,560,601
_1263
DvMF_1264: DvMF_1264 - Transposase-like Mu (RefSeq), at 1,560,629 to 1,562,815
_1264
Position (kb)
1558
1559
1560 Strain fitness (log2 ratio)
-2
-1
0
1 at 1557.980 kb on - strand, within DvMF_1260 at 1558.065 kb on + strand, within DvMF_1260 at 1558.336 kb on - strand, within DvMF_1260 at 1558.410 kb on + strand, within DvMF_1260 at 1558.424 kb on + strand, within DvMF_1260 at 1559.867 kb on + strand at 1559.881 kb on - strand at 1559.935 kb on + strand at 1559.973 kb on + strand, within DvMF_1262 at 1559.973 kb on + strand, within DvMF_1262 at 1559.981 kb on - strand, within DvMF_1262 at 1559.981 kb on - strand, within DvMF_1262 at 1560.007 kb on + strand, within DvMF_1262 at 1560.199 kb on + strand, within DvMF_1262 at 1560.222 kb on - strand, within DvMF_1262 at 1560.224 kb on + strand, within DvMF_1262 at 1560.491 kb on - strand, within DvMF_1263 at 1560.510 kb on + strand, within DvMF_1263 at 1560.510 kb on + strand, within DvMF_1263 at 1560.510 kb on + strand, within DvMF_1263 at 1560.518 kb on - strand, within DvMF_1263 at 1560.566 kb on + strand, within DvMF_1263
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 1,557,980 - DvMF_1260 0.53 -0.2 1,558,065 + DvMF_1260 0.60 -0.0 1,558,336 - DvMF_1260 0.80 -0.7 1,558,410 + DvMF_1260 0.85 -0.1 1,558,424 + DvMF_1260 0.86 -0.5 1,559,867 + -2.0 1,559,881 - -0.8 1,559,935 + -0.7 1,559,973 + DvMF_1262 0.16 -1.3 1,559,973 + DvMF_1262 0.16 -0.8 1,559,981 - DvMF_1262 0.18 -0.6 1,559,981 - DvMF_1262 0.18 -0.5 1,560,007 + DvMF_1262 0.24 -0.7 1,560,199 + DvMF_1262 0.69 -1.4 1,560,222 - DvMF_1262 0.75 -0.7 1,560,224 + DvMF_1262 0.75 -0.5 1,560,491 - DvMF_1263 0.60 +0.7 1,560,510 + DvMF_1263 0.67 -1.2 1,560,510 + DvMF_1263 0.67 -0.9 1,560,510 + DvMF_1263 0.67 -1.1 1,560,518 - DvMF_1263 0.70 -2.1 1,560,566 + DvMF_1263 0.87 -1.4
Or see this region's nucleotide sequence