Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1188

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1187 and DvMF_1188 are separated by 380 nucleotidesDvMF_1188 and DvMF_1189 overlap by 4 nucleotides DvMF_1187: DvMF_1187 - protein of unknown function DUF191 (RefSeq), at 1,464,927 to 1,465,820 _1187 DvMF_1188: DvMF_1188 - Radical SAM domain protein (RefSeq), at 1,466,201 to 1,467,364 _1188 DvMF_1189: DvMF_1189 - Radical SAM domain protein (RefSeq), at 1,467,361 to 1,468,521 _1189 Position (kb) 1466 1467 1468Strain fitness (log2 ratio) -2 -1 0 1 2at 1465.976 kb on - strandat 1466.010 kb on - strandat 1466.108 kb on + strandat 1466.111 kb on - strandat 1466.190 kb on + strandat 1467.297 kb on - strandat 1467.297 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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1,465,976 - -0.6
1,466,010 - +2.1
1,466,108 + -0.9
1,466,111 - -0.8
1,466,190 + -1.8
1,467,297 - -0.8
1,467,297 - +0.4

Or see this region's nucleotide sequence