Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1069 and DvMF_1070 are separated by 19 nucleotides DvMF_1070 and DvMF_1071 are separated by 84 nucleotides DvMF_1071 and DvMF_1072 overlap by 4 nucleotides
DvMF_1069: DvMF_1069 - hypothetical protein (RefSeq), at 1,309,598 to 1,310,512
_1069
DvMF_1070: DvMF_1070 - hypothetical protein (RefSeq), at 1,310,532 to 1,311,197
_1070
DvMF_1071: DvMF_1071 - hypothetical protein (RefSeq), at 1,311,282 to 1,311,773
_1071
DvMF_1072: DvMF_1072 - hypothetical protein (RefSeq), at 1,311,770 to 1,313,557
_1072
Position (kb)
1310
1311
1312 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1309.587 kb on + strand at 1309.615 kb on + strand at 1309.741 kb on - strand, within DvMF_1069 at 1310.014 kb on + strand, within DvMF_1069 at 1310.188 kb on - strand, within DvMF_1069 at 1310.286 kb on + strand, within DvMF_1069 at 1310.549 kb on + strand at 1310.872 kb on + strand, within DvMF_1070 at 1310.882 kb on + strand, within DvMF_1070 at 1310.882 kb on + strand, within DvMF_1070 at 1310.971 kb on - strand, within DvMF_1070 at 1311.046 kb on - strand, within DvMF_1070 at 1311.319 kb on + strand at 1311.645 kb on - strand, within DvMF_1071 at 1311.646 kb on - strand, within DvMF_1071 at 1311.810 kb on - strand at 1311.846 kb on - strand at 1311.881 kb on + strand at 1311.978 kb on + strand, within DvMF_1072 at 1312.062 kb on + strand, within DvMF_1072
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 1,309,587 + +2.1 1,309,615 + -0.7 1,309,741 - DvMF_1069 0.16 -1.0 1,310,014 + DvMF_1069 0.45 -0.8 1,310,188 - DvMF_1069 0.64 -0.8 1,310,286 + DvMF_1069 0.75 -0.5 1,310,549 + -2.2 1,310,872 + DvMF_1070 0.51 -0.9 1,310,882 + DvMF_1070 0.53 +0.1 1,310,882 + DvMF_1070 0.53 -0.2 1,310,971 - DvMF_1070 0.66 -0.5 1,311,046 - DvMF_1070 0.77 +0.2 1,311,319 + -1.3 1,311,645 - DvMF_1071 0.74 -0.9 1,311,646 - DvMF_1071 0.74 -1.0 1,311,810 - -2.0 1,311,846 - -0.6 1,311,881 + -1.8 1,311,978 + DvMF_1072 0.12 -1.5 1,312,062 + DvMF_1072 0.16 -0.1
Or see this region's nucleotide sequence