Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1048

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1046 and DvMF_1047 are separated by 71 nucleotidesDvMF_1047 and DvMF_1048 are separated by 289 nucleotidesDvMF_1048 and DvMF_1049 are separated by 34 nucleotides DvMF_1046: DvMF_1046 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,271,731 to 1,272,522 _1046 DvMF_1047: DvMF_1047 - Rhodanese domain protein (RefSeq), at 1,272,594 to 1,273,151 _1047 DvMF_1048: DvMF_1048 - Sel1 domain protein repeat-containing protein (RefSeq), at 1,273,441 to 1,275,138 _1048 DvMF_1049: DvMF_1049 - major facilitator superfamily MFS_1 (RefSeq), at 1,275,173 to 1,276,438 _1049 Position (kb) 1273 1274 1275 1276Strain fitness (log2 ratio) -2 -1 0 1 2at 1272.612 kb on - strandat 1272.638 kb on - strandat 1272.938 kb on - strand, within DvMF_1047at 1272.945 kb on + strand, within DvMF_1047at 1273.136 kb on - strandat 1273.332 kb on - strandat 1273.740 kb on + strand, within DvMF_1048at 1273.828 kb on + strand, within DvMF_1048at 1273.921 kb on + strand, within DvMF_1048at 1274.108 kb on - strand, within DvMF_1048at 1274.148 kb on + strand, within DvMF_1048at 1274.148 kb on + strand, within DvMF_1048at 1274.156 kb on - strand, within DvMF_1048at 1274.269 kb on + strand, within DvMF_1048at 1274.407 kb on + strand, within DvMF_1048at 1274.408 kb on - strand, within DvMF_1048at 1274.516 kb on - strand, within DvMF_1048at 1274.525 kb on + strand, within DvMF_1048at 1274.700 kb on + strand, within DvMF_1048at 1275.447 kb on + strand, within DvMF_1049at 1275.550 kb on - strand, within DvMF_1049at 1275.707 kb on + strand, within DvMF_1049at 1275.713 kb on + strand, within DvMF_1049at 1275.749 kb on - strand, within DvMF_1049at 1275.749 kb on - strand, within DvMF_1049at 1275.836 kb on + strand, within DvMF_1049at 1275.972 kb on - strand, within DvMF_1049at 1276.046 kb on + strand, within DvMF_1049

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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1,272,612 - +1.9
1,272,638 - -0.8
1,272,938 - DvMF_1047 0.62 -0.2
1,272,945 + DvMF_1047 0.63 -0.9
1,273,136 - -1.0
1,273,332 - -0.5
1,273,740 + DvMF_1048 0.18 +1.0
1,273,828 + DvMF_1048 0.23 +1.1
1,273,921 + DvMF_1048 0.28 +1.3
1,274,108 - DvMF_1048 0.39 +1.1
1,274,148 + DvMF_1048 0.42 +1.1
1,274,148 + DvMF_1048 0.42 +1.8
1,274,156 - DvMF_1048 0.42 +1.1
1,274,269 + DvMF_1048 0.49 +0.7
1,274,407 + DvMF_1048 0.57 +1.0
1,274,408 - DvMF_1048 0.57 +0.4
1,274,516 - DvMF_1048 0.63 +1.1
1,274,525 + DvMF_1048 0.64 +1.0
1,274,700 + DvMF_1048 0.74 +0.8
1,275,447 + DvMF_1049 0.22 -2.4
1,275,550 - DvMF_1049 0.30 +0.4
1,275,707 + DvMF_1049 0.42 -0.5
1,275,713 + DvMF_1049 0.43 -1.3
1,275,749 - DvMF_1049 0.45 -0.3
1,275,749 - DvMF_1049 0.45 -0.5
1,275,836 + DvMF_1049 0.52 +0.2
1,275,972 - DvMF_1049 0.63 -1.2
1,276,046 + DvMF_1049 0.69 +0.5

Or see this region's nucleotide sequence