Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1046 and DvMF_1047 are separated by 71 nucleotides DvMF_1047 and DvMF_1048 are separated by 289 nucleotides DvMF_1048 and DvMF_1049 are separated by 34 nucleotides
DvMF_1046: DvMF_1046 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,271,731 to 1,272,522
_1046
DvMF_1047: DvMF_1047 - Rhodanese domain protein (RefSeq), at 1,272,594 to 1,273,151
_1047
DvMF_1048: DvMF_1048 - Sel1 domain protein repeat-containing protein (RefSeq), at 1,273,441 to 1,275,138
_1048
DvMF_1049: DvMF_1049 - major facilitator superfamily MFS_1 (RefSeq), at 1,275,173 to 1,276,438
_1049
Position (kb)
1273
1274
1275
1276 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1272.612 kb on - strand at 1272.638 kb on - strand at 1272.938 kb on - strand, within DvMF_1047 at 1272.945 kb on + strand, within DvMF_1047 at 1273.136 kb on - strand at 1273.332 kb on - strand at 1273.740 kb on + strand, within DvMF_1048 at 1273.828 kb on + strand, within DvMF_1048 at 1273.921 kb on + strand, within DvMF_1048 at 1274.108 kb on - strand, within DvMF_1048 at 1274.148 kb on + strand, within DvMF_1048 at 1274.148 kb on + strand, within DvMF_1048 at 1274.156 kb on - strand, within DvMF_1048 at 1274.269 kb on + strand, within DvMF_1048 at 1274.407 kb on + strand, within DvMF_1048 at 1274.408 kb on - strand, within DvMF_1048 at 1274.516 kb on - strand, within DvMF_1048 at 1274.525 kb on + strand, within DvMF_1048 at 1274.700 kb on + strand, within DvMF_1048 at 1275.447 kb on + strand, within DvMF_1049 at 1275.550 kb on - strand, within DvMF_1049 at 1275.707 kb on + strand, within DvMF_1049 at 1275.713 kb on + strand, within DvMF_1049 at 1275.749 kb on - strand, within DvMF_1049 at 1275.749 kb on - strand, within DvMF_1049 at 1275.836 kb on + strand, within DvMF_1049 at 1275.972 kb on - strand, within DvMF_1049 at 1276.046 kb on + strand, within DvMF_1049
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 1,272,612 - +1.9 1,272,638 - -0.8 1,272,938 - DvMF_1047 0.62 -0.2 1,272,945 + DvMF_1047 0.63 -0.9 1,273,136 - -1.0 1,273,332 - -0.5 1,273,740 + DvMF_1048 0.18 +1.0 1,273,828 + DvMF_1048 0.23 +1.1 1,273,921 + DvMF_1048 0.28 +1.3 1,274,108 - DvMF_1048 0.39 +1.1 1,274,148 + DvMF_1048 0.42 +1.1 1,274,148 + DvMF_1048 0.42 +1.8 1,274,156 - DvMF_1048 0.42 +1.1 1,274,269 + DvMF_1048 0.49 +0.7 1,274,407 + DvMF_1048 0.57 +1.0 1,274,408 - DvMF_1048 0.57 +0.4 1,274,516 - DvMF_1048 0.63 +1.1 1,274,525 + DvMF_1048 0.64 +1.0 1,274,700 + DvMF_1048 0.74 +0.8 1,275,447 + DvMF_1049 0.22 -2.4 1,275,550 - DvMF_1049 0.30 +0.4 1,275,707 + DvMF_1049 0.42 -0.5 1,275,713 + DvMF_1049 0.43 -1.3 1,275,749 - DvMF_1049 0.45 -0.3 1,275,749 - DvMF_1049 0.45 -0.5 1,275,836 + DvMF_1049 0.52 +0.2 1,275,972 - DvMF_1049 0.63 -1.2 1,276,046 + DvMF_1049 0.69 +0.5
Or see this region's nucleotide sequence