Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1036

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1035 and DvMF_1036 are separated by 131 nucleotidesDvMF_1036 and DvMF_1037 are separated by 183 nucleotides DvMF_1035: DvMF_1035 - hypothetical protein (RefSeq), at 1,257,393 to 1,258,034 _1035 DvMF_1036: DvMF_1036 - Lytic transglycosylase catalytic (RefSeq), at 1,258,166 to 1,258,774 _1036 DvMF_1037: DvMF_1037 - peptidase A24A domain protein (RefSeq), at 1,258,958 to 1,259,761 _1037 Position (kb) 1258 1259Strain fitness (log2 ratio) -2 -1 0 1 2at 1257.222 kb on - strandat 1257.313 kb on - strandat 1257.450 kb on + strandat 1257.628 kb on + strand, within DvMF_1035at 1257.633 kb on + strand, within DvMF_1035at 1257.738 kb on - strand, within DvMF_1035at 1257.800 kb on - strand, within DvMF_1035at 1257.939 kb on - strand, within DvMF_1035at 1258.023 kb on - strandat 1258.445 kb on - strand, within DvMF_1036at 1258.581 kb on - strand, within DvMF_1036at 1259.187 kb on - strand, within DvMF_1037at 1259.306 kb on + strand, within DvMF_1037at 1259.429 kb on + strand, within DvMF_1037at 1259.655 kb on + strand, within DvMF_1037at 1259.712 kb on - strandat 1259.758 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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1,257,222 - -0.2
1,257,313 - -0.9
1,257,450 + +0.8
1,257,628 + DvMF_1035 0.37 +1.0
1,257,633 + DvMF_1035 0.37 -0.8
1,257,738 - DvMF_1035 0.54 +2.0
1,257,800 - DvMF_1035 0.63 -0.6
1,257,939 - DvMF_1035 0.85 -0.5
1,258,023 - -1.6
1,258,445 - DvMF_1036 0.46 -2.0
1,258,581 - DvMF_1036 0.68 -0.6
1,259,187 - DvMF_1037 0.28 +1.9
1,259,306 + DvMF_1037 0.43 -0.1
1,259,429 + DvMF_1037 0.59 +0.3
1,259,655 + DvMF_1037 0.87 -0.4
1,259,712 - +1.0
1,259,758 - +0.7

Or see this region's nucleotide sequence