Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0988

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0987 and DvMF_0988 are separated by 554 nucleotidesDvMF_0988 and DvMF_0989 are separated by 224 nucleotides DvMF_0987: DvMF_0987 - CoA-substrate-specific enzyme activase (RefSeq), at 1,198,861 to 1,199,670 _0987 DvMF_0988: DvMF_0988 - hydroxylamine reductase (RefSeq), at 1,200,225 to 1,201,844 _0988 DvMF_0989: DvMF_0989 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,202,069 to 1,202,950 _0989 Position (kb) 1200 1201 1202Strain fitness (log2 ratio) -2 -1 0 1at 1199.439 kb on - strand, within DvMF_0987at 1199.610 kb on - strandat 1200.031 kb on - strandat 1200.244 kb on + strandat 1200.435 kb on + strand, within DvMF_0988at 1200.443 kb on - strand, within DvMF_0988at 1200.538 kb on + strand, within DvMF_0988at 1200.721 kb on + strand, within DvMF_0988at 1200.721 kb on + strand, within DvMF_0988at 1200.764 kb on + strand, within DvMF_0988at 1200.770 kb on - strand, within DvMF_0988at 1200.792 kb on - strand, within DvMF_0988at 1200.846 kb on - strand, within DvMF_0988at 1201.365 kb on + strand, within DvMF_0988at 1201.370 kb on + strand, within DvMF_0988at 1201.433 kb on + strand, within DvMF_0988at 1201.441 kb on - strand, within DvMF_0988at 1201.521 kb on - strand, within DvMF_0988at 1201.565 kb on + strand, within DvMF_0988at 1202.068 kb on + strandat 1202.076 kb on - strandat 1202.140 kb on - strandat 1202.176 kb on + strand, within DvMF_0989at 1202.176 kb on + strand, within DvMF_0989at 1202.260 kb on + strand, within DvMF_0989at 1202.356 kb on + strand, within DvMF_0989at 1202.361 kb on + strand, within DvMF_0989at 1202.548 kb on - strand, within DvMF_0989at 1202.551 kb on - strand, within DvMF_0989at 1202.707 kb on + strand, within DvMF_0989at 1202.707 kb on + strand, within DvMF_0989

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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1,199,439 - DvMF_0987 0.71 -0.7
1,199,610 - -0.5
1,200,031 - -1.0
1,200,244 + -0.9
1,200,435 + DvMF_0988 0.13 -1.0
1,200,443 - DvMF_0988 0.13 -0.7
1,200,538 + DvMF_0988 0.19 -0.6
1,200,721 + DvMF_0988 0.31 -1.3
1,200,721 + DvMF_0988 0.31 -1.5
1,200,764 + DvMF_0988 0.33 -0.8
1,200,770 - DvMF_0988 0.34 -0.5
1,200,792 - DvMF_0988 0.35 -1.2
1,200,846 - DvMF_0988 0.38 -0.8
1,201,365 + DvMF_0988 0.70 -0.9
1,201,370 + DvMF_0988 0.71 -1.2
1,201,433 + DvMF_0988 0.75 -0.6
1,201,441 - DvMF_0988 0.75 -0.3
1,201,521 - DvMF_0988 0.80 -0.6
1,201,565 + DvMF_0988 0.83 -0.2
1,202,068 + -0.5
1,202,076 - -1.3
1,202,140 - -0.6
1,202,176 + DvMF_0989 0.12 +0.1
1,202,176 + DvMF_0989 0.12 -0.8
1,202,260 + DvMF_0989 0.22 -1.8
1,202,356 + DvMF_0989 0.33 -0.6
1,202,361 + DvMF_0989 0.33 -0.1
1,202,548 - DvMF_0989 0.54 -1.1
1,202,551 - DvMF_0989 0.55 -0.3
1,202,707 + DvMF_0989 0.72 -1.1
1,202,707 + DvMF_0989 0.72 -1.2

Or see this region's nucleotide sequence