Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0700 and DvMF_0701 overlap by 1 nucleotides DvMF_0701 and DvMF_0702 are separated by 245 nucleotides DvMF_0702 and DvMF_0703 are separated by 32 nucleotides
DvMF_0700: DvMF_0700 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 848,471 to 849,817
_0700
DvMF_0701: DvMF_0701 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 849,817 to 851,454
_0701
DvMF_0702: DvMF_0702 - hypothetical protein (RefSeq), at 851,700 to 852,092
_0702
DvMF_0703: DvMF_0703 - protein of unknown function DUF81 (RefSeq), at 852,125 to 853,063
_0703
Position (kb) 849
850
851
852 Strain fitness (log2 ratio) -2
-1
0
1
2 at 848.892 kb on - strand, within DvMF_0700 at 848.956 kb on + strand, within DvMF_0700 at 849.042 kb on - strand, within DvMF_0700 at 849.316 kb on + strand, within DvMF_0700 at 849.405 kb on - strand, within DvMF_0700 at 849.614 kb on - strand, within DvMF_0700 at 849.614 kb on - strand, within DvMF_0700 at 849.625 kb on + strand, within DvMF_0700 at 849.730 kb on + strand at 849.749 kb on - strand at 849.917 kb on + strand at 849.951 kb on + strand at 850.123 kb on - strand, within DvMF_0701 at 850.163 kb on + strand, within DvMF_0701 at 850.384 kb on + strand, within DvMF_0701 at 850.669 kb on - strand, within DvMF_0701 at 850.720 kb on + strand, within DvMF_0701 at 850.875 kb on + strand, within DvMF_0701 at 850.917 kb on + strand, within DvMF_0701 at 851.120 kb on - strand, within DvMF_0701 at 851.694 kb on - strand at 851.962 kb on + strand, within DvMF_0702 at 852.006 kb on + strand, within DvMF_0702 at 852.142 kb on - strand at 852.193 kb on - strand at 852.214 kb on + strand at 852.341 kb on - strand, within DvMF_0703
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 848,892 - DvMF_0700 0.31 -0.5 848,956 + DvMF_0700 0.36 -1.1 849,042 - DvMF_0700 0.42 -0.9 849,316 + DvMF_0700 0.63 +0.4 849,405 - DvMF_0700 0.69 -0.4 849,614 - DvMF_0700 0.85 -0.5 849,614 - DvMF_0700 0.85 +0.6 849,625 + DvMF_0700 0.86 -0.3 849,730 + -0.6 849,749 - -0.5 849,917 + -2.5 849,951 + -0.4 850,123 - DvMF_0701 0.19 -0.8 850,163 + DvMF_0701 0.21 -0.9 850,384 + DvMF_0701 0.35 -0.8 850,669 - DvMF_0701 0.52 -0.6 850,720 + DvMF_0701 0.55 -0.6 850,875 + DvMF_0701 0.65 +0.2 850,917 + DvMF_0701 0.67 -0.2 851,120 - DvMF_0701 0.80 -1.1 851,694 - +0.6 851,962 + DvMF_0702 0.67 -0.3 852,006 + DvMF_0702 0.78 +2.2 852,142 - -2.3 852,193 - -1.1 852,214 + -0.0 852,341 - DvMF_0703 0.23 -0.2
Or see this region's nucleotide sequence