Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0687

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0686 and DvMF_0687 are separated by 11 nucleotidesDvMF_0687 and DvMF_0688 are separated by 10 nucleotides DvMF_0686: DvMF_0686 - secretion ATPase, PEP-CTERM locus subfamily (RefSeq), at 827,628 to 828,815 _0686 DvMF_0687: DvMF_0687 - exopolysaccharide/PEPCTERM locus tyrosine autokinase (RefSeq), at 828,827 to 829,708 _0687 DvMF_0688: DvMF_0688 - polysaccharide chain length determinant protein, PEP-CTERM locus subfamily (RefSeq), at 829,719 to 831,161 _0688 Position (kb) 828 829 830Strain fitness (log2 ratio) -2 -1 0 1at 828.037 kb on + strand, within DvMF_0686at 828.417 kb on + strand, within DvMF_0686at 828.598 kb on - strand, within DvMF_0686at 828.677 kb on + strand, within DvMF_0686at 828.808 kb on + strandat 828.935 kb on + strand, within DvMF_0687at 829.158 kb on - strand, within DvMF_0687at 829.343 kb on + strand, within DvMF_0687at 829.348 kb on + strand, within DvMF_0687at 829.351 kb on - strand, within DvMF_0687at 829.538 kb on - strand, within DvMF_0687at 829.717 kb on + strandat 829.725 kb on - strandat 829.725 kb on - strandat 829.725 kb on - strandat 829.804 kb on - strandat 829.815 kb on - strandat 829.820 kb on + strandat 829.863 kb on - strandat 829.985 kb on - strand, within DvMF_0688at 830.273 kb on + strand, within DvMF_0688at 830.488 kb on + strand, within DvMF_0688

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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828,037 + DvMF_0686 0.34 -0.4
828,417 + DvMF_0686 0.66 +0.4
828,598 - DvMF_0686 0.82 -1.0
828,677 + DvMF_0686 0.88 -0.7
828,808 + -1.3
828,935 + DvMF_0687 0.12 -1.6
829,158 - DvMF_0687 0.38 -1.5
829,343 + DvMF_0687 0.59 -1.1
829,348 + DvMF_0687 0.59 -0.3
829,351 - DvMF_0687 0.59 -1.9
829,538 - DvMF_0687 0.81 -1.0
829,717 + -0.3
829,725 - -0.7
829,725 - -1.1
829,725 - -0.6
829,804 - +0.1
829,815 - -0.7
829,820 + -0.5
829,863 - -1.8
829,985 - DvMF_0688 0.18 -0.8
830,273 + DvMF_0688 0.38 -1.5
830,488 + DvMF_0688 0.53 -0.9

Or see this region's nucleotide sequence