Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0669 and DvMF_0670 are separated by 74 nucleotides DvMF_0670 and DvMF_0671 overlap by 26 nucleotides DvMF_0671 and DvMF_0672 are separated by 6 nucleotides
DvMF_0669: DvMF_0669 - hypothetical protein (RefSeq), at 807,347 to 809,689
_0669
DvMF_0670: DvMF_0670 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 809,764 to 811,125
_0670
DvMF_0671: DvMF_0671 - EpsI family protein (RefSeq), at 811,100 to 811,831
_0671
DvMF_0672: DvMF_0672 - eight transmembrane protein EpsH (RefSeq), at 811,838 to 812,692
_0672
Position (kb) 809
810
811
812 Strain fitness (log2 ratio) -2
-1
0
1 at 808.770 kb on + strand, within DvMF_0669 at 808.775 kb on + strand, within DvMF_0669 at 808.783 kb on - strand, within DvMF_0669 at 808.853 kb on - strand, within DvMF_0669 at 808.918 kb on - strand, within DvMF_0669 at 809.360 kb on + strand, within DvMF_0669 at 809.777 kb on - strand at 809.989 kb on + strand, within DvMF_0670 at 810.371 kb on + strand, within DvMF_0670 at 810.508 kb on + strand, within DvMF_0670 at 810.549 kb on - strand, within DvMF_0670 at 810.558 kb on + strand, within DvMF_0670 at 810.566 kb on - strand, within DvMF_0670 at 810.789 kb on + strand, within DvMF_0670 at 811.003 kb on + strand at 811.080 kb on - strand at 811.588 kb on - strand, within DvMF_0671 at 811.690 kb on + strand, within DvMF_0671 at 811.700 kb on + strand, within DvMF_0671 at 811.826 kb on - strand at 811.834 kb on + strand at 811.879 kb on - strand at 811.896 kb on - strand at 811.909 kb on - strand at 812.104 kb on + strand, within DvMF_0672
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 808,770 + DvMF_0669 0.61 -0.2 808,775 + DvMF_0669 0.61 -1.5 808,783 - DvMF_0669 0.61 -0.1 808,853 - DvMF_0669 0.64 -0.4 808,918 - DvMF_0669 0.67 -0.7 809,360 + DvMF_0669 0.86 -0.4 809,777 - -0.6 809,989 + DvMF_0670 0.17 -0.5 810,371 + DvMF_0670 0.45 -1.0 810,508 + DvMF_0670 0.55 -1.4 810,549 - DvMF_0670 0.58 -0.5 810,558 + DvMF_0670 0.58 -1.1 810,566 - DvMF_0670 0.59 -1.2 810,789 + DvMF_0670 0.75 -0.3 811,003 + -0.5 811,080 - -0.6 811,588 - DvMF_0671 0.67 -0.2 811,690 + DvMF_0671 0.81 -0.6 811,700 + DvMF_0671 0.82 -0.6 811,826 - -0.2 811,834 + -1.8 811,879 - -0.3 811,896 - +0.1 811,909 - -0.6 812,104 + DvMF_0672 0.31 -0.3
Or see this region's nucleotide sequence