Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0631 and DvMF_0632 are separated by 446 nucleotides DvMF_0632 and DvMF_0633 are separated by 146 nucleotides DvMF_0633 and DvMF_0634 overlap by 4 nucleotides
DvMF_0631: DvMF_0631 - efflux transporter, RND family, MFP subunit (RefSeq), at 753,352 to 754,650
_0631
DvMF_0632: DvMF_0632 - hypothetical protein (RefSeq), at 755,097 to 755,330
_0632
DvMF_0633: DvMF_0633 - Phosphoglycerate mutase (RefSeq), at 755,477 to 756,460
_0633
DvMF_0634: DvMF_0634 - metal dependent phosphohydrolase (RefSeq), at 756,457 to 758,001
_0634
Position (kb) 755
756
757 Strain fitness (log2 ratio) -1
0
1
2
3 at 754.563 kb on - strand at 754.737 kb on + strand at 755.021 kb on + strand at 755.088 kb on + strand at 755.089 kb on - strand at 755.350 kb on + strand at 755.391 kb on - strand at 755.596 kb on + strand, within DvMF_0633 at 755.625 kb on - strand, within DvMF_0633 at 755.777 kb on - strand, within DvMF_0633 at 755.947 kb on + strand, within DvMF_0633 at 756.144 kb on - strand, within DvMF_0633 at 756.144 kb on - strand, within DvMF_0633 at 756.338 kb on - strand, within DvMF_0633 at 756.456 kb on + strand at 756.591 kb on + strand at 756.701 kb on + strand, within DvMF_0634 at 756.705 kb on + strand, within DvMF_0634 at 757.122 kb on - strand, within DvMF_0634 at 757.422 kb on - strand, within DvMF_0634
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 754,563 - -1.2 754,737 + +0.2 755,021 + -0.5 755,088 + -1.3 755,089 - -1.2 755,350 + -1.4 755,391 - -1.1 755,596 + DvMF_0633 0.12 -0.8 755,625 - DvMF_0633 0.15 -1.7 755,777 - DvMF_0633 0.30 -0.1 755,947 + DvMF_0633 0.48 -0.6 756,144 - DvMF_0633 0.68 -1.1 756,144 - DvMF_0633 0.68 -0.7 756,338 - DvMF_0633 0.88 -0.8 756,456 + -1.0 756,591 + +2.8 756,701 + DvMF_0634 0.16 -0.5 756,705 + DvMF_0634 0.16 -1.0 757,122 - DvMF_0634 0.43 +0.9 757,422 - DvMF_0634 0.62 -1.0
Or see this region's nucleotide sequence