Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0447

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0446 and DvMF_0447 are separated by 299 nucleotidesDvMF_0447 and DvMF_0448 are separated by 289 nucleotides DvMF_0446: DvMF_0446 - putative glutamate synthase subunit beta (RefSeq), at 521,240 to 522,331 _0446 DvMF_0447: DvMF_0447 - amino acid-binding ACT domain protein (RefSeq), at 522,631 to 523,062 _0447 DvMF_0448: DvMF_0448 - molybdopterin oxidoreductase (RefSeq), at 523,352 to 525,337 _0448 Position (kb) 522 523 524Strain fitness (log2 ratio) -2 -1 0 1at 521.898 kb on + strand, within DvMF_0446at 521.906 kb on - strand, within DvMF_0446at 521.906 kb on - strand, within DvMF_0446at 522.000 kb on - strand, within DvMF_0446at 522.165 kb on - strand, within DvMF_0446at 522.179 kb on - strand, within DvMF_0446at 522.321 kb on + strandat 522.534 kb on - strandat 522.792 kb on + strand, within DvMF_0447at 522.818 kb on - strand, within DvMF_0447at 523.644 kb on - strand, within DvMF_0448

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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521,898 + DvMF_0446 0.60 -1.0
521,906 - DvMF_0446 0.61 +0.4
521,906 - DvMF_0446 0.61 -0.2
522,000 - DvMF_0446 0.70 -1.8
522,165 - DvMF_0446 0.85 -0.8
522,179 - DvMF_0446 0.86 +0.0
522,321 + -0.0
522,534 - -1.3
522,792 + DvMF_0447 0.37 -1.3
522,818 - DvMF_0447 0.43 -1.8
523,644 - DvMF_0448 0.15 -0.1

Or see this region's nucleotide sequence