Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0254 and DvMF_0255 overlap by 14 nucleotides DvMF_0255 and DvMF_0256 are separated by 93 nucleotides DvMF_0256 and DvMF_0257 are separated by 317 nucleotides
DvMF_0254: DvMF_0254 - response regulator receiver modulated serine phosphatase (RefSeq), at 289,325 to 290,917
_0254
DvMF_0255: DvMF_0255 - D-tyrosyl-tRNA(Tyr) deacylase (RefSeq), at 290,904 to 291,458
_0255
DvMF_0256: DvMF_0256 - AMP-dependent synthetase and ligase (RefSeq), at 291,552 to 293,303
_0256
DvMF_0257: DvMF_0257 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (RefSeq), at 293,621 to 294,940
_0257
Position (kb) 291
292
293
294 Strain fitness (log2 ratio) -1
0
1 at 290.736 kb on + strand, within DvMF_0254 at 290.980 kb on - strand, within DvMF_0255 at 291.663 kb on - strand at 291.670 kb on + strand at 291.670 kb on + strand at 291.678 kb on - strand at 291.678 kb on - strand at 291.844 kb on + strand, within DvMF_0256 at 291.850 kb on + strand, within DvMF_0256 at 291.850 kb on + strand, within DvMF_0256 at 292.186 kb on + strand, within DvMF_0256 at 292.246 kb on + strand, within DvMF_0256 at 292.888 kb on - strand, within DvMF_0256 at 292.902 kb on + strand, within DvMF_0256 at 293.009 kb on - strand, within DvMF_0256 at 293.101 kb on + strand, within DvMF_0256 at 293.157 kb on + strand at 293.294 kb on - strand at 293.306 kb on - strand at 293.438 kb on - strand at 293.620 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 290,736 + DvMF_0254 0.89 -0.8 290,980 - DvMF_0255 0.14 -0.3 291,663 - +0.2 291,670 + -0.7 291,670 + +0.8 291,678 - -0.0 291,678 - +1.0 291,844 + DvMF_0256 0.17 +1.6 291,850 + DvMF_0256 0.17 +0.5 291,850 + DvMF_0256 0.17 +0.9 292,186 + DvMF_0256 0.36 -0.1 292,246 + DvMF_0256 0.40 +0.4 292,888 - DvMF_0256 0.76 +1.0 292,902 + DvMF_0256 0.77 +0.9 293,009 - DvMF_0256 0.83 +0.4 293,101 + DvMF_0256 0.88 -0.3 293,157 + -0.9 293,294 - +0.2 293,306 - -1.7 293,438 - -1.3 293,620 + +0.0
Or see this region's nucleotide sequence