Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0245 and DvMF_0246 are separated by 723 nucleotides DvMF_0246 and DvMF_0247 are separated by 66 nucleotides DvMF_0247 and DvMF_0248 are separated by 9 nucleotides
DvMF_0245: DvMF_0245 - hypothetical protein (RefSeq), at 277,587 to 277,982
_0245
DvMF_0246: DvMF_0246 - protein of unknown function DUF1078 domain protein (RefSeq), at 278,706 to 280,343
_0246
DvMF_0247: DvMF_0247 - flagellar hook capping protein (RefSeq), at 280,410 to 281,201
_0247
DvMF_0248: DvMF_0248 - flagellar hook-length control protein (RefSeq), at 281,211 to 283,106
_0248
Position (kb) 278
279
280
281 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 277.852 kb on + strand, within DvMF_0245 at 277.937 kb on + strand, within DvMF_0245 at 278.166 kb on + strand at 278.177 kb on + strand at 278.506 kb on - strand at 278.537 kb on - strand at 278.759 kb on - strand at 278.932 kb on + strand, within DvMF_0246 at 278.945 kb on + strand, within DvMF_0246 at 279.015 kb on + strand, within DvMF_0246 at 279.117 kb on + strand, within DvMF_0246 at 279.236 kb on + strand, within DvMF_0246 at 279.560 kb on - strand, within DvMF_0246 at 279.601 kb on + strand, within DvMF_0246 at 279.659 kb on + strand, within DvMF_0246 at 279.959 kb on + strand, within DvMF_0246 at 280.050 kb on - strand, within DvMF_0246 at 280.149 kb on + strand, within DvMF_0246 at 280.246 kb on + strand at 280.246 kb on + strand at 280.246 kb on + strand at 280.630 kb on + strand, within DvMF_0247 at 280.827 kb on + strand, within DvMF_0247 at 281.223 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 277,852 + DvMF_0245 0.67 -1.0 277,937 + DvMF_0245 0.88 -1.1 278,166 + -1.9 278,177 + -0.3 278,506 - -0.1 278,537 - -0.6 278,759 - +1.5 278,932 + DvMF_0246 0.14 +2.1 278,945 + DvMF_0246 0.15 +2.1 279,015 + DvMF_0246 0.19 +1.8 279,117 + DvMF_0246 0.25 +2.1 279,236 + DvMF_0246 0.32 +2.1 279,560 - DvMF_0246 0.52 +3.0 279,601 + DvMF_0246 0.55 +2.0 279,659 + DvMF_0246 0.58 +2.3 279,959 + DvMF_0246 0.76 +1.9 280,050 - DvMF_0246 0.82 +2.2 280,149 + DvMF_0246 0.88 +1.9 280,246 + +2.4 280,246 + +3.0 280,246 + +2.2 280,630 + DvMF_0247 0.28 +1.7 280,827 + DvMF_0247 0.53 +2.8 281,223 + +2.6
Or see this region's nucleotide sequence