Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0210 and DvMF_0211 overlap by 4 nucleotides DvMF_0211 and DvMF_0212 are separated by 92 nucleotides
DvMF_0210: DvMF_0210 - Extracellular ligand-binding receptor (RefSeq), at 230,566 to 232,344
_0210
DvMF_0211: DvMF_0211 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 232,341 to 235,571
_0211
DvMF_0212: DvMF_0212 - hypothetical protein (RefSeq), at 235,664 to 239,317
_0212
Position (kb) 232
233
234
235
236 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 231.628 kb on + strand, within DvMF_0210 at 231.717 kb on - strand, within DvMF_0210 at 231.901 kb on - strand, within DvMF_0210 at 231.929 kb on + strand, within DvMF_0210 at 231.983 kb on - strand, within DvMF_0210 at 232.610 kb on + strand at 232.631 kb on - strand at 232.768 kb on - strand, within DvMF_0211 at 232.864 kb on + strand, within DvMF_0211 at 232.929 kb on + strand, within DvMF_0211 at 232.942 kb on - strand, within DvMF_0211 at 233.019 kb on - strand, within DvMF_0211 at 233.106 kb on + strand, within DvMF_0211 at 233.134 kb on + strand, within DvMF_0211 at 233.147 kb on - strand, within DvMF_0211 at 233.170 kb on - strand, within DvMF_0211 at 233.218 kb on + strand, within DvMF_0211 at 233.226 kb on - strand, within DvMF_0211 at 233.389 kb on - strand, within DvMF_0211 at 233.461 kb on + strand, within DvMF_0211 at 233.537 kb on - strand, within DvMF_0211 at 233.577 kb on + strand, within DvMF_0211 at 234.252 kb on - strand, within DvMF_0211 at 234.303 kb on + strand, within DvMF_0211 at 234.390 kb on - strand, within DvMF_0211 at 234.430 kb on + strand, within DvMF_0211 at 234.644 kb on - strand, within DvMF_0211 at 234.644 kb on - strand, within DvMF_0211 at 234.649 kb on - strand, within DvMF_0211 at 234.681 kb on + strand, within DvMF_0211 at 234.681 kb on + strand, within DvMF_0211 at 234.681 kb on + strand, within DvMF_0211 at 234.681 kb on + strand, within DvMF_0211 at 234.689 kb on - strand, within DvMF_0211 at 234.689 kb on - strand, within DvMF_0211 at 234.867 kb on - strand, within DvMF_0211 at 235.074 kb on + strand, within DvMF_0211 at 235.738 kb on - strand at 236.314 kb on - strand, within DvMF_0212 at 236.466 kb on + strand, within DvMF_0212 at 236.519 kb on + strand, within DvMF_0212 at 236.564 kb on + strand, within DvMF_0212
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 231,628 + DvMF_0210 0.60 -0.4 231,717 - DvMF_0210 0.65 -0.4 231,901 - DvMF_0210 0.75 +0.2 231,929 + DvMF_0210 0.77 -0.0 231,983 - DvMF_0210 0.80 +0.2 232,610 + -0.8 232,631 - -0.8 232,768 - DvMF_0211 0.13 -1.6 232,864 + DvMF_0211 0.16 +0.3 232,929 + DvMF_0211 0.18 -0.6 232,942 - DvMF_0211 0.19 -0.9 233,019 - DvMF_0211 0.21 +0.3 233,106 + DvMF_0211 0.24 -0.5 233,134 + DvMF_0211 0.25 -0.6 233,147 - DvMF_0211 0.25 -0.7 233,170 - DvMF_0211 0.26 +2.0 233,218 + DvMF_0211 0.27 -0.1 233,226 - DvMF_0211 0.27 -0.1 233,389 - DvMF_0211 0.32 -1.7 233,461 + DvMF_0211 0.35 -1.1 233,537 - DvMF_0211 0.37 -0.4 233,577 + DvMF_0211 0.38 -0.1 234,252 - DvMF_0211 0.59 -0.5 234,303 + DvMF_0211 0.61 -0.0 234,390 - DvMF_0211 0.63 -0.1 234,430 + DvMF_0211 0.65 +0.6 234,644 - DvMF_0211 0.71 +0.5 234,644 - DvMF_0211 0.71 -0.3 234,649 - DvMF_0211 0.71 +0.4 234,681 + DvMF_0211 0.72 -0.1 234,681 + DvMF_0211 0.72 -0.3 234,681 + DvMF_0211 0.72 +0.2 234,681 + DvMF_0211 0.72 -0.1 234,689 - DvMF_0211 0.73 +0.8 234,689 - DvMF_0211 0.73 -0.6 234,867 - DvMF_0211 0.78 -0.1 235,074 + DvMF_0211 0.85 +0.4 235,738 - -3.1 236,314 - DvMF_0212 0.18 -3.2 236,466 + DvMF_0212 0.22 -2.5 236,519 + DvMF_0212 0.23 -1.5 236,564 + DvMF_0212 0.25 -3.0
Or see this region's nucleotide sequence