Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0209 and DvMF_0210 are separated by 147 nucleotides DvMF_0210 and DvMF_0211 overlap by 4 nucleotides
DvMF_0209: DvMF_0209 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq), at 229,450 to 230,418
_0209
DvMF_0210: DvMF_0210 - Extracellular ligand-binding receptor (RefSeq), at 230,566 to 232,344
_0210
DvMF_0211: DvMF_0211 - diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq), at 232,341 to 235,571
_0211
Position (kb) 230
231
232
233 Strain fitness (log2 ratio) -2
-1
0
1
2 at 229.590 kb on - strand, within DvMF_0209 at 229.737 kb on + strand, within DvMF_0209 at 229.766 kb on + strand, within DvMF_0209 at 229.806 kb on - strand, within DvMF_0209 at 230.125 kb on + strand, within DvMF_0209 at 230.396 kb on - strand at 230.406 kb on - strand at 230.592 kb on - strand at 230.634 kb on - strand at 230.855 kb on - strand, within DvMF_0210 at 230.986 kb on + strand, within DvMF_0210 at 231.100 kb on - strand, within DvMF_0210 at 231.156 kb on - strand, within DvMF_0210 at 231.315 kb on + strand, within DvMF_0210 at 231.628 kb on + strand, within DvMF_0210 at 231.717 kb on - strand, within DvMF_0210 at 231.901 kb on - strand, within DvMF_0210 at 231.929 kb on + strand, within DvMF_0210 at 231.983 kb on - strand, within DvMF_0210 at 232.610 kb on + strand at 232.631 kb on - strand at 232.768 kb on - strand, within DvMF_0211 at 232.864 kb on + strand, within DvMF_0211 at 232.929 kb on + strand, within DvMF_0211 at 232.942 kb on - strand, within DvMF_0211 at 233.019 kb on - strand, within DvMF_0211 at 233.106 kb on + strand, within DvMF_0211 at 233.134 kb on + strand, within DvMF_0211 at 233.147 kb on - strand, within DvMF_0211 at 233.170 kb on - strand, within DvMF_0211 at 233.218 kb on + strand, within DvMF_0211 at 233.226 kb on - strand, within DvMF_0211
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 229,590 - DvMF_0209 0.14 -1.0 229,737 + DvMF_0209 0.30 -1.2 229,766 + DvMF_0209 0.33 -0.8 229,806 - DvMF_0209 0.37 -1.1 230,125 + DvMF_0209 0.70 -0.6 230,396 - -2.5 230,406 - -0.9 230,592 - -0.6 230,634 - -1.4 230,855 - DvMF_0210 0.16 +0.1 230,986 + DvMF_0210 0.24 -0.6 231,100 - DvMF_0210 0.30 +0.1 231,156 - DvMF_0210 0.33 -0.5 231,315 + DvMF_0210 0.42 +0.1 231,628 + DvMF_0210 0.60 -0.4 231,717 - DvMF_0210 0.65 -0.4 231,901 - DvMF_0210 0.75 +0.2 231,929 + DvMF_0210 0.77 -0.0 231,983 - DvMF_0210 0.80 +0.2 232,610 + -0.8 232,631 - -0.8 232,768 - DvMF_0211 0.13 -1.6 232,864 + DvMF_0211 0.16 +0.3 232,929 + DvMF_0211 0.18 -0.6 232,942 - DvMF_0211 0.19 -0.9 233,019 - DvMF_0211 0.21 +0.3 233,106 + DvMF_0211 0.24 -0.5 233,134 + DvMF_0211 0.25 -0.6 233,147 - DvMF_0211 0.25 -0.7 233,170 - DvMF_0211 0.26 +2.0 233,218 + DvMF_0211 0.27 -0.1 233,226 - DvMF_0211 0.27 -0.1
Or see this region's nucleotide sequence