Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0161 and DvMF_0162 are separated by 791 nucleotides DvMF_0162 and DvMF_0163 are separated by 335 nucleotides DvMF_0163 and DvMF_0164 are separated by 81 nucleotides
DvMF_0161: DvMF_0161 - integral membrane protein (RefSeq), at 174,367 to 176,121
_0161
DvMF_0162: DvMF_0162 - hypothetical protein (RefSeq), at 176,913 to 178,202
_0162
DvMF_0163: DvMF_0163 - no description, at 178,538 to 178,755
_0163
DvMF_0164: DvMF_0164 - hypothetical protein (RefSeq), at 178,837 to 179,658
_0164
Position (kb) 176
177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 175.922 kb on - strand, within DvMF_0161 at 176.188 kb on + strand at 176.228 kb on - strand at 176.356 kb on + strand at 176.400 kb on + strand at 176.580 kb on + strand at 176.894 kb on + strand at 176.960 kb on + strand at 177.024 kb on - strand at 177.179 kb on + strand, within DvMF_0162 at 177.233 kb on + strand, within DvMF_0162 at 177.233 kb on + strand, within DvMF_0162 at 177.302 kb on + strand, within DvMF_0162 at 177.642 kb on - strand, within DvMF_0162 at 177.764 kb on - strand, within DvMF_0162 at 177.871 kb on - strand, within DvMF_0162 at 177.940 kb on + strand, within DvMF_0162 at 177.948 kb on - strand, within DvMF_0162 at 177.976 kb on + strand, within DvMF_0162 at 177.984 kb on - strand, within DvMF_0162 at 177.984 kb on - strand, within DvMF_0162 at 178.104 kb on - strand at 178.291 kb on - strand at 178.319 kb on + strand at 178.415 kb on + strand at 178.591 kb on + strand, within DvMF_0163 at 178.591 kb on + strand, within DvMF_0163 at 178.591 kb on + strand, within DvMF_0163 at 178.599 kb on - strand, within DvMF_0163 at 178.788 kb on + strand at 178.796 kb on - strand at 178.796 kb on - strand at 178.833 kb on - strand at 178.853 kb on - strand at 178.882 kb on - strand at 178.962 kb on + strand, within DvMF_0164 at 179.071 kb on - strand, within DvMF_0164
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 175,922 - DvMF_0161 0.89 -2.9 176,188 + -0.5 176,228 - -0.9 176,356 + -1.8 176,400 + -0.3 176,580 + -0.3 176,894 + -0.7 176,960 + -1.8 177,024 - -1.3 177,179 + DvMF_0162 0.21 -1.3 177,233 + DvMF_0162 0.25 -1.1 177,233 + DvMF_0162 0.25 -1.6 177,302 + DvMF_0162 0.30 -1.8 177,642 - DvMF_0162 0.57 -2.0 177,764 - DvMF_0162 0.66 -1.5 177,871 - DvMF_0162 0.74 -1.6 177,940 + DvMF_0162 0.80 -0.9 177,948 - DvMF_0162 0.80 -1.6 177,976 + DvMF_0162 0.82 -0.1 177,984 - DvMF_0162 0.83 -1.7 177,984 - DvMF_0162 0.83 -2.4 178,104 - -2.0 178,291 - -0.7 178,319 + -0.8 178,415 + -0.1 178,591 + DvMF_0163 0.24 -0.1 178,591 + DvMF_0163 0.24 -0.0 178,591 + DvMF_0163 0.24 +0.3 178,599 - DvMF_0163 0.28 -1.0 178,788 + -1.2 178,796 - +0.2 178,796 - -0.4 178,833 - -0.6 178,853 - +0.0 178,882 - -0.2 178,962 + DvMF_0164 0.15 -1.1 179,071 - DvMF_0164 0.28 -0.6
Or see this region's nucleotide sequence