Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0145 and DvMF_0146 overlap by 4 nucleotides DvMF_0146 and DvMF_0147 are separated by 6 nucleotides DvMF_0147 and DvMF_0148 are separated by 204 nucleotides
DvMF_0145: DvMF_0145 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 161,265 to 163,133
_0145
DvMF_0146: DvMF_0146 - hypothetical protein (RefSeq), at 163,130 to 163,639
_0146
DvMF_0147: DvMF_0147 - hypothetical protein (RefSeq), at 163,646 to 164,674
_0147
DvMF_0148: DvMF_0148 - HAD-superfamily hydrolase, subfamily IA, variant 1 (RefSeq), at 164,879 to 165,622
_0148
Position (kb)
163
164
165 Strain fitness (log2 ratio)
-1
0
1 at 162.886 kb on + strand, within DvMF_0145 at 162.886 kb on - strand, within DvMF_0145 at 163.103 kb on - strand at 163.127 kb on + strand at 163.375 kb on - strand, within DvMF_0146 at 163.466 kb on - strand, within DvMF_0146 at 163.624 kb on + strand at 163.624 kb on + strand at 163.632 kb on - strand at 163.632 kb on - strand at 163.632 kb on - strand at 163.682 kb on + strand at 163.690 kb on - strand at 163.874 kb on - strand, within DvMF_0147 at 163.900 kb on + strand, within DvMF_0147 at 163.942 kb on - strand, within DvMF_0147 at 164.022 kb on - strand, within DvMF_0147 at 164.037 kb on - strand, within DvMF_0147 at 164.048 kb on - strand, within DvMF_0147 at 164.187 kb on + strand, within DvMF_0147 at 164.483 kb on + strand, within DvMF_0147 at 164.550 kb on + strand, within DvMF_0147 at 164.558 kb on - strand, within DvMF_0147 at 164.604 kb on - strand at 164.891 kb on - strand at 165.184 kb on + strand, within DvMF_0148 at 165.333 kb on - strand, within DvMF_0148 at 165.333 kb on - strand, within DvMF_0148 at 165.374 kb on - strand, within DvMF_0148 at 165.386 kb on + strand, within DvMF_0148 at 165.499 kb on + strand, within DvMF_0148
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 162,886 + DvMF_0145 0.87 -1.3 162,886 - DvMF_0145 0.87 -1.1 163,103 - -0.8 163,127 + -0.6 163,375 - DvMF_0146 0.48 +0.3 163,466 - DvMF_0146 0.66 -0.7 163,624 + -0.5 163,624 + -0.8 163,632 - -0.2 163,632 - -0.9 163,632 - +0.2 163,682 + -0.4 163,690 - -0.7 163,874 - DvMF_0147 0.22 -0.5 163,900 + DvMF_0147 0.25 -0.1 163,942 - DvMF_0147 0.29 -0.7 164,022 - DvMF_0147 0.37 -0.9 164,037 - DvMF_0147 0.38 -0.8 164,048 - DvMF_0147 0.39 -1.1 164,187 + DvMF_0147 0.53 -0.3 164,483 + DvMF_0147 0.81 -1.4 164,550 + DvMF_0147 0.88 -1.6 164,558 - DvMF_0147 0.89 -1.3 164,604 - -0.5 164,891 - -0.9 165,184 + DvMF_0148 0.41 -0.5 165,333 - DvMF_0148 0.61 -0.2 165,333 - DvMF_0148 0.61 -0.1 165,374 - DvMF_0148 0.67 -0.5 165,386 + DvMF_0148 0.68 -1.5 165,499 + DvMF_0148 0.83 -0.5
Or see this region's nucleotide sequence