Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0126 and DvMF_0127 are separated by 167 nucleotides DvMF_0127 and DvMF_0128 are separated by 174 nucleotides DvMF_0128 and DvMF_0129 are separated by 192 nucleotides
DvMF_0126: DvMF_0126 - 1-deoxy-D-xylulose-5-phosphate synthase (RefSeq), at 137,757 to 139,697
_0126
DvMF_0127: DvMF_0127 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 139,865 to 142,180
_0127
DvMF_0128: DvMF_0128 - multiple antibiotic resistance (MarC)-related protein (RefSeq), at 142,355 to 142,972
_0128
DvMF_0129: DvMF_0129 - 6-pyruvoyl tetrahydropterin synthase and hypothetical protein (RefSeq), at 143,165 to 143,557
_0129
Position (kb) 139
140
141
142
143 Strain fitness (log2 ratio) -2
-1
0
1
2 at 140.098 kb on - strand, within DvMF_0127 at 140.129 kb on + strand, within DvMF_0127 at 140.481 kb on + strand, within DvMF_0127 at 140.590 kb on + strand, within DvMF_0127 at 140.684 kb on - strand, within DvMF_0127 at 140.922 kb on + strand, within DvMF_0127 at 141.007 kb on + strand, within DvMF_0127 at 141.078 kb on - strand, within DvMF_0127 at 141.189 kb on + strand, within DvMF_0127 at 141.422 kb on - strand, within DvMF_0127 at 141.472 kb on + strand, within DvMF_0127 at 141.512 kb on - strand, within DvMF_0127 at 141.530 kb on - strand, within DvMF_0127 at 141.780 kb on - strand, within DvMF_0127 at 141.914 kb on + strand, within DvMF_0127 at 141.914 kb on + strand, within DvMF_0127 at 142.570 kb on - strand, within DvMF_0128 at 142.741 kb on + strand, within DvMF_0128 at 142.847 kb on + strand, within DvMF_0128
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 140,098 - DvMF_0127 0.10 -0.5 140,129 + DvMF_0127 0.11 +2.2 140,481 + DvMF_0127 0.27 -1.3 140,590 + DvMF_0127 0.31 -0.4 140,684 - DvMF_0127 0.35 -0.8 140,922 + DvMF_0127 0.46 -0.4 141,007 + DvMF_0127 0.49 -0.8 141,078 - DvMF_0127 0.52 -0.8 141,189 + DvMF_0127 0.57 -0.3 141,422 - DvMF_0127 0.67 -0.5 141,472 + DvMF_0127 0.69 -0.7 141,512 - DvMF_0127 0.71 -0.6 141,530 - DvMF_0127 0.72 -0.5 141,780 - DvMF_0127 0.83 -2.4 141,914 + DvMF_0127 0.88 -1.0 141,914 + DvMF_0127 0.88 -1.5 142,570 - DvMF_0128 0.35 -1.3 142,741 + DvMF_0128 0.62 -0.2 142,847 + DvMF_0128 0.80 -1.1
Or see this region's nucleotide sequence