Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0031

Experiment: MoYLS4 with Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0030 and DvMF_0031 are separated by 298 nucleotidesDvMF_0031 and DvMF_0032 are separated by 276 nucleotides DvMF_0030: DvMF_0030 - hypothetical protein (RefSeq), at 38,598 to 38,939 _0030 DvMF_0031: DvMF_0031 - hypothetical protein (RefSeq), at 39,238 to 39,513 _0031 DvMF_0032: DvMF_0032 - diguanylate cyclase (RefSeq), at 39,790 to 41,526 _0032 Position (kb) 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1at 38.251 kb on + strandat 38.371 kb on + strandat 38.400 kb on + strandat 38.469 kb on - strandat 38.482 kb on - strandat 38.558 kb on - strandat 38.569 kb on - strandat 38.663 kb on + strand, within DvMF_0030at 38.703 kb on + strand, within DvMF_0030at 38.788 kb on - strand, within DvMF_0030at 38.913 kb on - strandat 38.931 kb on + strandat 38.996 kb on - strandat 39.227 kb on - strandat 39.295 kb on + strand, within DvMF_0031at 39.303 kb on - strand, within DvMF_0031at 39.765 kb on + strandat 39.774 kb on + strandat 39.798 kb on + strandat 40.082 kb on - strand, within DvMF_0032at 40.170 kb on - strand, within DvMF_0032at 40.287 kb on + strand, within DvMF_0032at 40.327 kb on - strand, within DvMF_0032

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml
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38,251 + -2.4
38,371 + -0.2
38,400 + -0.1
38,469 - -1.1
38,482 - +0.1
38,558 - -0.4
38,569 - -0.8
38,663 + DvMF_0030 0.19 -1.2
38,703 + DvMF_0030 0.31 +0.0
38,788 - DvMF_0030 0.56 -0.5
38,913 - -0.8
38,931 + -0.3
38,996 - -1.3
39,227 - -0.5
39,295 + DvMF_0031 0.21 -0.7
39,303 - DvMF_0031 0.24 -3.2
39,765 + +0.7
39,774 + +0.3
39,798 + -1.1
40,082 - DvMF_0032 0.17 -0.8
40,170 - DvMF_0032 0.22 -1.9
40,287 + DvMF_0032 0.29 -0.8
40,327 - DvMF_0032 0.31 -1.3

Or see this region's nucleotide sequence