Experiment: MoYLS4 with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0024 and DvMF_0025 are separated by 44 nucleotides DvMF_0025 and DvMF_0026 are separated by 235 nucleotides DvMF_0026 and DvMF_0027 are separated by 224 nucleotides
DvMF_0024: DvMF_0024 - histone deacetylase superfamily (RefSeq), at 29,953 to 31,272
_0024
DvMF_0025: DvMF_0025 - protein of unknown function DUF1121 (RefSeq), at 31,317 to 32,003
_0025
DvMF_0026: DvMF_0026 - succinyl-CoA synthetase, alpha subunit (RefSeq), at 32,239 to 34,368
_0026
DvMF_0027: DvMF_0027 - indolepyruvate/phenylpyruvate decarboxylase (RefSeq), at 34,593 to 36,311
_0027
Position (kb)
32
33
34
35 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 31.335 kb on - strand at 31.678 kb on + strand, within DvMF_0025 at 31.793 kb on - strand, within DvMF_0025 at 31.803 kb on - strand, within DvMF_0025 at 31.865 kb on - strand, within DvMF_0025 at 32.154 kb on - strand at 32.164 kb on - strand at 32.165 kb on - strand at 32.175 kb on - strand at 32.315 kb on + strand at 32.412 kb on + strand at 32.412 kb on + strand at 32.583 kb on - strand, within DvMF_0026 at 32.837 kb on - strand, within DvMF_0026 at 32.844 kb on - strand, within DvMF_0026 at 32.999 kb on + strand, within DvMF_0026 at 33.028 kb on - strand, within DvMF_0026 at 33.120 kb on - strand, within DvMF_0026 at 33.293 kb on + strand, within DvMF_0026 at 33.293 kb on + strand, within DvMF_0026 at 33.596 kb on + strand, within DvMF_0026 at 34.020 kb on - strand, within DvMF_0026 at 34.370 kb on - strand at 34.370 kb on - strand at 34.621 kb on + strand at 34.629 kb on - strand at 34.740 kb on + strand at 34.748 kb on - strand at 34.842 kb on + strand, within DvMF_0027 at 34.942 kb on - strand, within DvMF_0027 at 34.955 kb on - strand, within DvMF_0027 at 35.055 kb on - strand, within DvMF_0027 at 35.118 kb on + strand, within DvMF_0027 at 35.229 kb on - strand, within DvMF_0027
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vancomycin 0.5 mg/ml remove 31,335 - -0.3 31,678 + DvMF_0025 0.53 -0.0 31,793 - DvMF_0025 0.69 -0.4 31,803 - DvMF_0025 0.71 -0.6 31,865 - DvMF_0025 0.80 +3.8 32,154 - -0.3 32,164 - -0.8 32,165 - +0.1 32,175 - -1.5 32,315 + -0.4 32,412 + -0.4 32,412 + -0.6 32,583 - DvMF_0026 0.16 -0.6 32,837 - DvMF_0026 0.28 -1.1 32,844 - DvMF_0026 0.28 +0.2 32,999 + DvMF_0026 0.36 -0.8 33,028 - DvMF_0026 0.37 -1.5 33,120 - DvMF_0026 0.41 -0.5 33,293 + DvMF_0026 0.49 -1.2 33,293 + DvMF_0026 0.49 -0.6 33,596 + DvMF_0026 0.64 -0.2 34,020 - DvMF_0026 0.84 -0.9 34,370 - -0.5 34,370 - -0.8 34,621 + -0.2 34,629 - -0.6 34,740 + -1.0 34,748 - +0.7 34,842 + DvMF_0027 0.14 -0.5 34,942 - DvMF_0027 0.20 -0.3 34,955 - DvMF_0027 0.21 -0.7 35,055 - DvMF_0027 0.27 -0.4 35,118 + DvMF_0027 0.31 -0.5 35,229 - DvMF_0027 0.37 -1.1
Or see this region's nucleotide sequence