Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1581

Experiment: Spectinomycin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1580 and Pf6N2E2_1581 are separated by 548 nucleotidesPf6N2E2_1581 and Pf6N2E2_1582 are separated by 2 nucleotides Pf6N2E2_1580 - putative two-component system response regulator, at 1,848,837 to 1,849,454 _1580 Pf6N2E2_1581 - Type I secretion outer membrane protein, TolC precursor, at 1,850,003 to 1,851,376 _1581 Pf6N2E2_1582 - HlyD family secretion protein, at 1,851,379 to 1,852,695 _1582 Position (kb) 1850 1851 1852Strain fitness (log2 ratio) -2 -1 0 1 2at 1849.012 kb on + strand, within Pf6N2E2_1580at 1849.012 kb on + strand, within Pf6N2E2_1580at 1849.012 kb on + strand, within Pf6N2E2_1580at 1849.013 kb on - strand, within Pf6N2E2_1580at 1849.013 kb on - strand, within Pf6N2E2_1580at 1849.282 kb on + strand, within Pf6N2E2_1580at 1849.424 kb on + strandat 1849.426 kb on + strandat 1849.426 kb on + strandat 1849.426 kb on + strandat 1849.541 kb on + strandat 1849.541 kb on + strandat 1849.682 kb on - strandat 1849.691 kb on - strandat 1849.869 kb on + strandat 1850.057 kb on + strandat 1850.057 kb on + strandat 1850.058 kb on - strandat 1850.059 kb on + strandat 1850.377 kb on - strand, within Pf6N2E2_1581at 1850.377 kb on - strand, within Pf6N2E2_1581at 1850.415 kb on + strand, within Pf6N2E2_1581at 1850.415 kb on + strand, within Pf6N2E2_1581at 1850.435 kb on + strand, within Pf6N2E2_1581at 1850.435 kb on + strand, within Pf6N2E2_1581at 1850.448 kb on + strand, within Pf6N2E2_1581at 1850.448 kb on + strand, within Pf6N2E2_1581at 1850.448 kb on + strand, within Pf6N2E2_1581at 1850.448 kb on + strand, within Pf6N2E2_1581at 1850.448 kb on + strand, within Pf6N2E2_1581at 1850.448 kb on + strand, within Pf6N2E2_1581at 1850.449 kb on - strand, within Pf6N2E2_1581at 1850.449 kb on - strand, within Pf6N2E2_1581at 1850.449 kb on - strand, within Pf6N2E2_1581at 1850.481 kb on + strand, within Pf6N2E2_1581at 1850.835 kb on + strand, within Pf6N2E2_1581at 1850.835 kb on + strand, within Pf6N2E2_1581at 1850.928 kb on + strand, within Pf6N2E2_1581at 1850.928 kb on + strand, within Pf6N2E2_1581at 1850.928 kb on + strand, within Pf6N2E2_1581at 1851.015 kb on + strand, within Pf6N2E2_1581at 1851.015 kb on + strand, within Pf6N2E2_1581at 1851.015 kb on + strand, within Pf6N2E2_1581at 1851.016 kb on - strand, within Pf6N2E2_1581at 1851.046 kb on - strand, within Pf6N2E2_1581at 1851.066 kb on + strand, within Pf6N2E2_1581at 1851.067 kb on - strand, within Pf6N2E2_1581at 1851.204 kb on + strand, within Pf6N2E2_1581at 1851.205 kb on - strand, within Pf6N2E2_1581at 1851.344 kb on + strandat 1851.344 kb on + strandat 1851.344 kb on + strandat 1851.345 kb on - strandat 1851.345 kb on - strandat 1851.345 kb on - strandat 1851.432 kb on - strandat 1851.548 kb on + strand, within Pf6N2E2_1582at 1851.549 kb on - strand, within Pf6N2E2_1582at 1851.835 kb on - strand, within Pf6N2E2_1582at 1851.881 kb on + strand, within Pf6N2E2_1582at 1851.881 kb on + strand, within Pf6N2E2_1582at 1852.118 kb on + strand, within Pf6N2E2_1582

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Per-strain Table

Position Strand Gene LocusTag Fraction Spectinomycin 0.0125 mg/ml
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1,849,012 + Pf6N2E2_1580 0.28 +0.5
1,849,012 + Pf6N2E2_1580 0.28 +0.1
1,849,012 + Pf6N2E2_1580 0.28 +1.1
1,849,013 - Pf6N2E2_1580 0.28 -0.2
1,849,013 - Pf6N2E2_1580 0.28 +0.6
1,849,282 + Pf6N2E2_1580 0.72 +0.3
1,849,424 + +0.6
1,849,426 + -0.2
1,849,426 + -0.1
1,849,426 + +0.3
1,849,541 + +0.2
1,849,541 + +1.1
1,849,682 - -0.7
1,849,691 - -1.2
1,849,869 + +0.5
1,850,057 + -0.0
1,850,057 + +2.0
1,850,058 - +0.2
1,850,059 + +0.2
1,850,377 - Pf6N2E2_1581 0.27 +0.6
1,850,377 - Pf6N2E2_1581 0.27 -1.3
1,850,415 + Pf6N2E2_1581 0.30 +0.4
1,850,415 + Pf6N2E2_1581 0.30 -0.0
1,850,435 + Pf6N2E2_1581 0.31 +2.2
1,850,435 + Pf6N2E2_1581 0.31 +0.4
1,850,448 + Pf6N2E2_1581 0.32 -1.9
1,850,448 + Pf6N2E2_1581 0.32 +0.9
1,850,448 + Pf6N2E2_1581 0.32 +0.6
1,850,448 + Pf6N2E2_1581 0.32 -0.9
1,850,448 + Pf6N2E2_1581 0.32 -1.6
1,850,448 + Pf6N2E2_1581 0.32 -0.2
1,850,449 - Pf6N2E2_1581 0.32 +0.5
1,850,449 - Pf6N2E2_1581 0.32 +0.5
1,850,449 - Pf6N2E2_1581 0.32 +0.7
1,850,481 + Pf6N2E2_1581 0.35 -0.1
1,850,835 + Pf6N2E2_1581 0.61 +1.3
1,850,835 + Pf6N2E2_1581 0.61 +0.7
1,850,928 + Pf6N2E2_1581 0.67 -0.3
1,850,928 + Pf6N2E2_1581 0.67 +0.4
1,850,928 + Pf6N2E2_1581 0.67 -0.2
1,851,015 + Pf6N2E2_1581 0.74 -0.3
1,851,015 + Pf6N2E2_1581 0.74 +0.7
1,851,015 + Pf6N2E2_1581 0.74 +0.1
1,851,016 - Pf6N2E2_1581 0.74 -1.2
1,851,046 - Pf6N2E2_1581 0.76 -0.0
1,851,066 + Pf6N2E2_1581 0.77 -2.1
1,851,067 - Pf6N2E2_1581 0.77 +0.6
1,851,204 + Pf6N2E2_1581 0.87 +0.1
1,851,205 - Pf6N2E2_1581 0.87 -0.1
1,851,344 + +0.4
1,851,344 + -0.3
1,851,344 + +0.5
1,851,345 - +0.1
1,851,345 - -0.6
1,851,345 - +0.6
1,851,432 - -0.0
1,851,548 + Pf6N2E2_1582 0.13 +0.3
1,851,549 - Pf6N2E2_1582 0.13 -0.9
1,851,835 - Pf6N2E2_1582 0.35 +1.2
1,851,881 + Pf6N2E2_1582 0.38 -1.2
1,851,881 + Pf6N2E2_1582 0.38 +0.2
1,852,118 + Pf6N2E2_1582 0.56 +0.8

Or see this region's nucleotide sequence