Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_2039

Experiment: D-Cellobiose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_2037 and Ga0059261_2038 are separated by 199 nucleotidesGa0059261_2038 and Ga0059261_2039 are separated by 70 nucleotidesGa0059261_2039 and Ga0059261_2040 overlap by 4 nucleotides Ga0059261_2037: Ga0059261_2037 - LSU ribosomal protein L20P, at 2,138,198 to 2,138,563 _2037 Ga0059261_2038: Ga0059261_2038 - Putative threonine efflux protein, at 2,138,763 to 2,139,386 _2038 Ga0059261_2039: Ga0059261_2039 - phenylalanyl-tRNA synthetase, alpha subunit (EC 6.1.1.20), at 2,139,457 to 2,140,554 _2039 Ga0059261_2040: Ga0059261_2040 - phenylalanyl-tRNA synthetase beta subunit (EC 6.1.1.20), at 2,140,551 to 2,142,962 _2040 Position (kb) 2139 2140 2141Strain fitness (log2 ratio) -1 0 1at 2138.787 kb on + strandat 2138.787 kb on + strandat 2138.787 kb on + strandat 2138.787 kb on + strandat 2138.787 kb on + strandat 2138.787 kb on + strandat 2138.787 kb on + strandat 2138.788 kb on - strandat 2138.788 kb on - strandat 2138.788 kb on - strandat 2138.788 kb on - strandat 2138.788 kb on - strandat 2138.788 kb on - strandat 2138.788 kb on - strandat 2138.788 kb on - strandat 2138.991 kb on + strand, within Ga0059261_2038at 2138.991 kb on + strand, within Ga0059261_2038at 2138.991 kb on + strand, within Ga0059261_2038at 2138.992 kb on - strand, within Ga0059261_2038at 2139.006 kb on + strand, within Ga0059261_2038at 2139.006 kb on + strand, within Ga0059261_2038at 2139.006 kb on + strand, within Ga0059261_2038at 2139.006 kb on + strand, within Ga0059261_2038at 2139.007 kb on - strand, within Ga0059261_2038at 2139.007 kb on - strand, within Ga0059261_2038at 2139.007 kb on - strand, within Ga0059261_2038at 2139.007 kb on - strand, within Ga0059261_2038at 2139.007 kb on - strand, within Ga0059261_2038at 2139.007 kb on - strand, within Ga0059261_2038at 2139.102 kb on + strand, within Ga0059261_2038at 2139.102 kb on + strand, within Ga0059261_2038at 2139.102 kb on + strand, within Ga0059261_2038at 2139.102 kb on + strand, within Ga0059261_2038at 2139.103 kb on - strand, within Ga0059261_2038at 2139.103 kb on - strand, within Ga0059261_2038at 2139.103 kb on - strand, within Ga0059261_2038at 2139.252 kb on + strand, within Ga0059261_2038at 2139.252 kb on + strand, within Ga0059261_2038at 2139.252 kb on + strand, within Ga0059261_2038at 2139.252 kb on + strand, within Ga0059261_2038at 2139.253 kb on - strand, within Ga0059261_2038at 2139.253 kb on - strand, within Ga0059261_2038at 2139.253 kb on - strand, within Ga0059261_2038at 2139.253 kb on - strand, within Ga0059261_2038at 2139.253 kb on - strand, within Ga0059261_2038at 2139.253 kb on - strand, within Ga0059261_2038at 2139.261 kb on + strand, within Ga0059261_2038at 2139.261 kb on + strand, within Ga0059261_2038at 2139.262 kb on - strand, within Ga0059261_2038at 2139.262 kb on - strand, within Ga0059261_2038at 2139.262 kb on - strand, within Ga0059261_2038at 2139.262 kb on - strand, within Ga0059261_2038at 2139.384 kb on + strandat 2139.384 kb on + strandat 2139.384 kb on + strandat 2139.385 kb on - strandat 2139.385 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
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2,138,787 + -0.2
2,138,787 + -0.8
2,138,787 + +0.3
2,138,787 + +0.3
2,138,787 + -1.5
2,138,787 + -0.1
2,138,787 + -0.9
2,138,788 - -0.5
2,138,788 - -0.1
2,138,788 - -0.3
2,138,788 - +0.1
2,138,788 - -0.4
2,138,788 - -0.3
2,138,788 - -0.0
2,138,788 - -0.5
2,138,991 + Ga0059261_2038 0.37 -0.1
2,138,991 + Ga0059261_2038 0.37 -0.3
2,138,991 + Ga0059261_2038 0.37 +0.2
2,138,992 - Ga0059261_2038 0.37 +0.4
2,139,006 + Ga0059261_2038 0.39 +0.4
2,139,006 + Ga0059261_2038 0.39 +0.2
2,139,006 + Ga0059261_2038 0.39 -0.5
2,139,006 + Ga0059261_2038 0.39 -0.4
2,139,007 - Ga0059261_2038 0.39 +0.2
2,139,007 - Ga0059261_2038 0.39 +1.0
2,139,007 - Ga0059261_2038 0.39 +1.3
2,139,007 - Ga0059261_2038 0.39 -0.1
2,139,007 - Ga0059261_2038 0.39 -0.1
2,139,007 - Ga0059261_2038 0.39 +0.8
2,139,102 + Ga0059261_2038 0.54 +0.1
2,139,102 + Ga0059261_2038 0.54 +0.1
2,139,102 + Ga0059261_2038 0.54 -0.7
2,139,102 + Ga0059261_2038 0.54 +0.6
2,139,103 - Ga0059261_2038 0.54 +0.5
2,139,103 - Ga0059261_2038 0.54 -0.5
2,139,103 - Ga0059261_2038 0.54 -0.1
2,139,252 + Ga0059261_2038 0.78 +0.3
2,139,252 + Ga0059261_2038 0.78 -1.3
2,139,252 + Ga0059261_2038 0.78 +0.3
2,139,252 + Ga0059261_2038 0.78 +0.2
2,139,253 - Ga0059261_2038 0.79 +0.0
2,139,253 - Ga0059261_2038 0.79 -0.6
2,139,253 - Ga0059261_2038 0.79 +0.2
2,139,253 - Ga0059261_2038 0.79 +0.3
2,139,253 - Ga0059261_2038 0.79 -0.4
2,139,253 - Ga0059261_2038 0.79 -1.1
2,139,261 + Ga0059261_2038 0.80 -0.4
2,139,261 + Ga0059261_2038 0.80 +0.0
2,139,262 - Ga0059261_2038 0.80 +0.1
2,139,262 - Ga0059261_2038 0.80 +0.5
2,139,262 - Ga0059261_2038 0.80 -0.1
2,139,262 - Ga0059261_2038 0.80 -0.8
2,139,384 + -0.7
2,139,384 + -0.2
2,139,384 + -0.4
2,139,385 - -0.3
2,139,385 - +0.0

Or see this region's nucleotide sequence