Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_0548

Experiment: D-Cellobiose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGa0059261_0546 and Ga0059261_0547 are separated by 20 nucleotidesGa0059261_0547 and Ga0059261_0548 overlap by 4 nucleotidesGa0059261_0548 and Ga0059261_0549 overlap by 4 nucleotidesGa0059261_0549 and Ga0059261_0550 overlap by 4 nucleotides Ga0059261_0546: Ga0059261_0546 - Choline dehydrogenase and related flavoproteins, at 560,742 to 562,424 _0546 Ga0059261_0547: Ga0059261_0547 - Sugar phosphate isomerases/epimerases, at 562,445 to 563,275 _0547 Ga0059261_0548: Ga0059261_0548 - Gluconate 2-dehydrogenase subunit 3, at 563,272 to 563,841 _0548 Ga0059261_0549: Ga0059261_0549 - Domain of Unknown Function (DUF1080), at 563,838 to 564,653 _0549 Ga0059261_0550: Ga0059261_0550 - Hydroxypyruvate isomerase, at 564,650 to 565,573 _0550 Position (kb) 563 564Strain fitness (log2 ratio) -2 -1 0 1 2 3at 562.279 kb on + strandat 562.279 kb on + strandat 562.279 kb on + strandat 562.280 kb on - strandat 562.280 kb on - strandat 562.280 kb on - strandat 562.280 kb on - strandat 562.280 kb on - strandat 562.280 kb on - strandat 562.280 kb on - strandat 562.285 kb on + strandat 562.285 kb on + strandat 562.285 kb on + strandat 562.285 kb on + strandat 562.285 kb on + strandat 562.285 kb on + strandat 562.285 kb on + strandat 562.285 kb on + strandat 562.286 kb on - strandat 562.286 kb on - strandat 562.286 kb on - strandat 562.286 kb on - strandat 562.286 kb on - strandat 562.424 kb on + strandat 562.432 kb on + strandat 562.432 kb on + strandat 562.432 kb on + strandat 562.432 kb on + strandat 562.432 kb on + strandat 562.433 kb on - strandat 562.433 kb on - strandat 562.441 kb on - strandat 562.441 kb on - strandat 562.441 kb on - strandat 562.498 kb on - strandat 562.498 kb on - strandat 562.527 kb on + strandat 562.527 kb on + strandat 562.528 kb on - strand, within Ga0059261_0547at 562.528 kb on - strand, within Ga0059261_0547at 562.528 kb on - strand, within Ga0059261_0547at 562.528 kb on - strand, within Ga0059261_0547at 562.528 kb on - strand, within Ga0059261_0547at 562.624 kb on + strand, within Ga0059261_0547at 562.624 kb on + strand, within Ga0059261_0547at 562.624 kb on + strand, within Ga0059261_0547at 562.624 kb on + strandat 562.625 kb on - strand, within Ga0059261_0547at 562.638 kb on + strand, within Ga0059261_0547at 562.638 kb on + strand, within Ga0059261_0547at 562.638 kb on + strand, within Ga0059261_0547at 562.638 kb on + strand, within Ga0059261_0547at 562.638 kb on + strand, within Ga0059261_0547at 562.639 kb on - strand, within Ga0059261_0547at 562.644 kb on + strand, within Ga0059261_0547at 562.644 kb on + strand, within Ga0059261_0547at 562.644 kb on + strand, within Ga0059261_0547at 562.644 kb on + strand, within Ga0059261_0547at 562.644 kb on + strand, within Ga0059261_0547at 562.644 kb on + strand, within Ga0059261_0547at 562.645 kb on - strand, within Ga0059261_0547at 562.645 kb on - strand, within Ga0059261_0547at 562.645 kb on - strand, within Ga0059261_0547at 562.645 kb on - strand, within Ga0059261_0547at 562.917 kb on + strand, within Ga0059261_0547at 562.917 kb on + strand, within Ga0059261_0547at 562.917 kb on + strand, within Ga0059261_0547at 562.917 kb on + strand, within Ga0059261_0547at 562.917 kb on + strand, within Ga0059261_0547at 562.917 kb on + strand, within Ga0059261_0547at 562.917 kb on + strand, within Ga0059261_0547at 562.917 kb on + strand, within Ga0059261_0547at 562.918 kb on - strand, within Ga0059261_0547at 562.918 kb on - strand, within Ga0059261_0547at 562.918 kb on - strand, within Ga0059261_0547at 562.918 kb on - strand, within Ga0059261_0547at 562.918 kb on - strand, within Ga0059261_0547at 562.918 kb on - strand, within Ga0059261_0547at 562.996 kb on - strand, within Ga0059261_0547at 563.073 kb on + strand, within Ga0059261_0547at 563.074 kb on - strand, within Ga0059261_0547at 563.074 kb on - strand, within Ga0059261_0547at 563.074 kb on - strand, within Ga0059261_0547at 563.169 kb on + strand, within Ga0059261_0547at 563.169 kb on + strand, within Ga0059261_0547at 563.169 kb on + strand, within Ga0059261_0547at 563.169 kb on + strand, within Ga0059261_0547at 563.169 kb on + strand, within Ga0059261_0547at 563.170 kb on - strand, within Ga0059261_0547at 563.282 kb on + strandat 563.282 kb on + strandat 563.282 kb on + strandat 563.283 kb on - strandat 563.283 kb on - strandat 563.283 kb on - strandat 563.283 kb on - strandat 563.283 kb on - strandat 563.319 kb on + strandat 563.321 kb on + strandat 563.321 kb on + strandat 563.321 kb on + strandat 563.321 kb on + strandat 563.342 kb on + strand, within Ga0059261_0548at 563.342 kb on + strand, within Ga0059261_0548at 563.342 kb on + strand, within Ga0059261_0548at 563.343 kb on - strand, within Ga0059261_0548at 563.378 kb on + strand, within Ga0059261_0548at 563.378 kb on + strand, within Ga0059261_0548at 563.378 kb on + strand, within Ga0059261_0548at 563.378 kb on + strand, within Ga0059261_0548at 563.378 kb on + strand, within Ga0059261_0548at 563.378 kb on + strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.379 kb on - strand, within Ga0059261_0548at 563.381 kb on + strand, within Ga0059261_0548at 563.381 kb on + strand, within Ga0059261_0548at 563.637 kb on + strand, within Ga0059261_0548at 563.638 kb on - strand, within Ga0059261_0548at 563.783 kb on + strand, within Ga0059261_0548at 563.783 kb on + strand, within Ga0059261_0548at 563.784 kb on - strand, within Ga0059261_0548at 563.892 kb on + strandat 563.969 kb on - strand, within Ga0059261_0549at 564.052 kb on + strand, within Ga0059261_0549at 564.052 kb on + strand, within Ga0059261_0549at 564.052 kb on + strand, within Ga0059261_0549at 564.102 kb on + strand, within Ga0059261_0549at 564.102 kb on + strand, within Ga0059261_0549at 564.102 kb on + strand, within Ga0059261_0549at 564.102 kb on + strand, within Ga0059261_0549at 564.103 kb on - strand, within Ga0059261_0549at 564.103 kb on - strand, within Ga0059261_0549at 564.103 kb on - strand, within Ga0059261_0549at 564.112 kb on + strand, within Ga0059261_0549at 564.112 kb on + strand, within Ga0059261_0549at 564.113 kb on - strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.196 kb on + strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.197 kb on - strand, within Ga0059261_0549at 564.235 kb on + strand, within Ga0059261_0549at 564.235 kb on + strand, within Ga0059261_0549at 564.260 kb on + strand, within Ga0059261_0549at 564.260 kb on + strand, within Ga0059261_0549at 564.684 kb on + strandat 564.685 kb on - strandat 564.759 kb on + strand, within Ga0059261_0550at 564.759 kb on + strand, within Ga0059261_0550at 564.759 kb on + strand, within Ga0059261_0550at 564.759 kb on + strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.760 kb on - strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.795 kb on + strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550at 564.796 kb on - strand, within Ga0059261_0550

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cellobiose (C)
remove
562,279 + -0.4
562,279 + +0.2
562,279 + -1.3
562,280 - -0.4
562,280 - +0.9
562,280 - -1.1
562,280 - +0.1
562,280 - +1.9
562,280 - -0.3
562,280 - +0.7
562,285 + -0.0
562,285 + +1.2
562,285 + -0.6
562,285 + +0.1
562,285 + +0.1
562,285 + +1.2
562,285 + -0.2
562,285 + -0.3
562,286 - -2.3
562,286 - -1.3
562,286 - -1.6
562,286 - -0.9
562,286 - +0.4
562,424 + -0.1
562,432 + -0.6
562,432 + -0.9
562,432 + -0.5
562,432 + +0.6
562,432 + -1.3
562,433 - +2.8
562,433 - -1.1
562,441 - +0.2
562,441 - +0.6
562,441 - -0.5
562,498 - -0.1
562,498 - -0.8
562,527 + +0.2
562,527 + +1.0
562,528 - Ga0059261_0547 0.10 -0.7
562,528 - Ga0059261_0547 0.10 +0.1
562,528 - Ga0059261_0547 0.10 -1.2
562,528 - Ga0059261_0547 0.10 -0.5
562,528 - Ga0059261_0547 0.10 -0.0
562,624 + Ga0059261_0547 0.22 +0.2
562,624 + Ga0059261_0547 0.22 -0.5
562,624 + Ga0059261_0547 0.22 +0.4
562,624 + +1.4
562,625 - Ga0059261_0547 0.22 -0.7
562,638 + Ga0059261_0547 0.23 -1.3
562,638 + Ga0059261_0547 0.23 -0.5
562,638 + Ga0059261_0547 0.23 -0.9
562,638 + Ga0059261_0547 0.23 -0.1
562,638 + Ga0059261_0547 0.23 -0.9
562,639 - Ga0059261_0547 0.23 +0.0
562,644 + Ga0059261_0547 0.24 -1.1
562,644 + Ga0059261_0547 0.24 -0.8
562,644 + Ga0059261_0547 0.24 +0.9
562,644 + Ga0059261_0547 0.24 -1.6
562,644 + Ga0059261_0547 0.24 +0.3
562,644 + Ga0059261_0547 0.24 -0.2
562,645 - Ga0059261_0547 0.24 -0.2
562,645 - Ga0059261_0547 0.24 -1.2
562,645 - Ga0059261_0547 0.24 -0.0
562,645 - Ga0059261_0547 0.24 +0.1
562,917 + Ga0059261_0547 0.57 +0.3
562,917 + Ga0059261_0547 0.57 +0.3
562,917 + Ga0059261_0547 0.57 -0.8
562,917 + Ga0059261_0547 0.57 +0.4
562,917 + Ga0059261_0547 0.57 -1.1
562,917 + Ga0059261_0547 0.57 -1.4
562,917 + Ga0059261_0547 0.57 -1.1
562,917 + Ga0059261_0547 0.57 +0.1
562,918 - Ga0059261_0547 0.57 -0.2
562,918 - Ga0059261_0547 0.57 -0.3
562,918 - Ga0059261_0547 0.57 -0.4
562,918 - Ga0059261_0547 0.57 -0.4
562,918 - Ga0059261_0547 0.57 -0.2
562,918 - Ga0059261_0547 0.57 -0.6
562,996 - Ga0059261_0547 0.66 +0.9
563,073 + Ga0059261_0547 0.76 -0.1
563,074 - Ga0059261_0547 0.76 -1.2
563,074 - Ga0059261_0547 0.76 +0.2
563,074 - Ga0059261_0547 0.76 -0.6
563,169 + Ga0059261_0547 0.87 +0.2
563,169 + Ga0059261_0547 0.87 -0.2
563,169 + Ga0059261_0547 0.87 -0.6
563,169 + Ga0059261_0547 0.87 -0.3
563,169 + Ga0059261_0547 0.87 -0.7
563,170 - Ga0059261_0547 0.87 -1.1
563,282 + -0.9
563,282 + -1.8
563,282 + -0.3
563,283 - +0.2
563,283 - +0.6
563,283 - +0.2
563,283 - +0.7
563,283 - +0.2
563,319 + +0.6
563,321 + -0.4
563,321 + +0.6
563,321 + +0.5
563,321 + -0.3
563,342 + Ga0059261_0548 0.12 +0.3
563,342 + Ga0059261_0548 0.12 -0.5
563,342 + Ga0059261_0548 0.12 +0.3
563,343 - Ga0059261_0548 0.12 -0.2
563,378 + Ga0059261_0548 0.19 -0.6
563,378 + Ga0059261_0548 0.19 -0.0
563,378 + Ga0059261_0548 0.19 -0.2
563,378 + Ga0059261_0548 0.19 +0.4
563,378 + Ga0059261_0548 0.19 -0.9
563,378 + Ga0059261_0548 0.19 -0.0
563,379 - Ga0059261_0548 0.19 -0.1
563,379 - Ga0059261_0548 0.19 +0.7
563,379 - Ga0059261_0548 0.19 -0.0
563,379 - Ga0059261_0548 0.19 +0.4
563,379 - Ga0059261_0548 0.19 -0.1
563,379 - Ga0059261_0548 0.19 -0.6
563,379 - Ga0059261_0548 0.19 -2.4
563,379 - Ga0059261_0548 0.19 -0.4
563,379 - Ga0059261_0548 0.19 -0.4
563,379 - Ga0059261_0548 0.19 -1.0
563,379 - Ga0059261_0548 0.19 -0.6
563,381 + Ga0059261_0548 0.19 +0.8
563,381 + Ga0059261_0548 0.19 -0.8
563,637 + Ga0059261_0548 0.64 -0.8
563,638 - Ga0059261_0548 0.64 -0.3
563,783 + Ga0059261_0548 0.90 -0.6
563,783 + Ga0059261_0548 0.90 -1.0
563,784 - Ga0059261_0548 0.90 -0.7
563,892 + -0.4
563,969 - Ga0059261_0549 0.16 +0.0
564,052 + Ga0059261_0549 0.26 -0.9
564,052 + Ga0059261_0549 0.26 +0.0
564,052 + Ga0059261_0549 0.26 -0.7
564,102 + Ga0059261_0549 0.32 -0.4
564,102 + Ga0059261_0549 0.32 -0.7
564,102 + Ga0059261_0549 0.32 +0.5
564,102 + Ga0059261_0549 0.32 +0.1
564,103 - Ga0059261_0549 0.32 +0.3
564,103 - Ga0059261_0549 0.32 +0.7
564,103 - Ga0059261_0549 0.32 +0.1
564,112 + Ga0059261_0549 0.34 -1.7
564,112 + Ga0059261_0549 0.34 -0.9
564,113 - Ga0059261_0549 0.34 +1.1
564,196 + Ga0059261_0549 0.44 -0.0
564,196 + Ga0059261_0549 0.44 +0.2
564,196 + Ga0059261_0549 0.44 +0.4
564,196 + Ga0059261_0549 0.44 -0.5
564,196 + Ga0059261_0549 0.44 -0.1
564,196 + Ga0059261_0549 0.44 -0.3
564,197 - Ga0059261_0549 0.44 +0.8
564,197 - Ga0059261_0549 0.44 +0.1
564,197 - Ga0059261_0549 0.44 -0.6
564,197 - Ga0059261_0549 0.44 -1.1
564,197 - Ga0059261_0549 0.44 -0.5
564,197 - Ga0059261_0549 0.44 +0.2
564,235 + Ga0059261_0549 0.49 +0.7
564,235 + Ga0059261_0549 0.49 -0.1
564,260 + Ga0059261_0549 0.52 -0.4
564,260 + Ga0059261_0549 0.52 -0.6
564,684 + +0.3
564,685 - +0.4
564,759 + Ga0059261_0550 0.12 -0.7
564,759 + Ga0059261_0550 0.12 +0.1
564,759 + Ga0059261_0550 0.12 +0.3
564,759 + Ga0059261_0550 0.12 -0.5
564,760 - Ga0059261_0550 0.12 +1.0
564,760 - Ga0059261_0550 0.12 -1.0
564,760 - Ga0059261_0550 0.12 +0.3
564,760 - Ga0059261_0550 0.12 +0.3
564,795 + Ga0059261_0550 0.16 +0.1
564,795 + Ga0059261_0550 0.16 -0.3
564,795 + Ga0059261_0550 0.16 +0.2
564,795 + Ga0059261_0550 0.16 -0.1
564,796 - Ga0059261_0550 0.16 +0.2
564,796 - Ga0059261_0550 0.16 +0.4
564,796 - Ga0059261_0550 0.16 -0.0
564,796 - Ga0059261_0550 0.16 -0.1
564,796 - Ga0059261_0550 0.16 +0.3
564,796 - Ga0059261_0550 0.16 -0.2
564,796 - Ga0059261_0550 0.16 -0.2

Or see this region's nucleotide sequence