Strain Fitness in Caulobacter crescentus NA1000 around CCNA_R0010

Experiment: PYE with Tetracycline 0.00005 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCCNA_00662 and CCNA_00663 are separated by 43 nucleotidesCCNA_00663 and CCNA_R0010 are separated by 421 nucleotidesCCNA_R0010 and CCNA_00664 are separated by 86 nucleotides CCNA_00662: CCNA_00662 - hypothetical protein, at 719,217 to 719,564 _00662 CCNA_00663: CCNA_00663 - bacterial apoptosis endonuclease BapE, at 719,608 to 719,943 _00663 CCNA_R0010: CCNA_R0010 - tRNA-Arg, at 720,365 to 720,441 _R0010 CCNA_00664: CCNA_00664 - C4-dicarboxylate transport protein, at 720,528 to 721,781 _00664 Position (kb) 720 721Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 719.373 kb on - strand, within CCNA_00662at 719.378 kb on + strand, within CCNA_00662at 719.396 kb on - strand, within CCNA_00662at 719.396 kb on - strand, within CCNA_00662at 719.408 kb on - strand, within CCNA_00662at 719.417 kb on + strand, within CCNA_00662at 719.448 kb on + strand, within CCNA_00662at 719.456 kb on - strand, within CCNA_00662at 719.484 kb on - strand, within CCNA_00662at 719.487 kb on + strand, within CCNA_00662at 719.506 kb on + strand, within CCNA_00662at 719.509 kb on - strand, within CCNA_00662at 719.572 kb on - strandat 719.592 kb on + strandat 719.604 kb on - strandat 719.605 kb on + strandat 719.638 kb on - strandat 719.655 kb on + strand, within CCNA_00663at 719.655 kb on + strand, within CCNA_00663at 719.655 kb on + strand, within CCNA_00663at 719.655 kb on + strand, within CCNA_00663at 719.660 kb on + strand, within CCNA_00663at 719.663 kb on - strand, within CCNA_00663at 719.663 kb on - strand, within CCNA_00663at 719.668 kb on - strand, within CCNA_00663at 719.695 kb on + strand, within CCNA_00663at 719.695 kb on + strand, within CCNA_00663at 719.703 kb on - strand, within CCNA_00663at 719.703 kb on - strand, within CCNA_00663at 719.721 kb on - strand, within CCNA_00663at 719.721 kb on - strand, within CCNA_00663at 719.743 kb on - strand, within CCNA_00663at 719.744 kb on - strand, within CCNA_00663at 719.746 kb on - strand, within CCNA_00663at 719.775 kb on + strand, within CCNA_00663at 719.790 kb on - strand, within CCNA_00663at 719.799 kb on - strand, within CCNA_00663at 719.816 kb on + strand, within CCNA_00663at 719.819 kb on - strand, within CCNA_00663at 719.846 kb on + strand, within CCNA_00663at 719.973 kb on + strandat 719.973 kb on + strandat 719.973 kb on + strandat 719.981 kb on - strandat 719.981 kb on - strandat 719.981 kb on - strandat 720.023 kb on + strandat 720.024 kb on + strandat 720.034 kb on + strandat 720.034 kb on + strandat 720.042 kb on - strandat 720.042 kb on - strandat 720.042 kb on - strandat 720.050 kb on - strandat 720.050 kb on - strandat 720.050 kb on - strandat 720.068 kb on + strandat 720.128 kb on - strandat 720.136 kb on - strandat 720.147 kb on + strandat 720.161 kb on + strandat 720.209 kb on - strandat 720.256 kb on + strandat 720.326 kb on - strandat 720.326 kb on - strandat 720.327 kb on - strandat 720.341 kb on + strandat 720.341 kb on + strandat 720.341 kb on + strandat 720.341 kb on + strandat 720.349 kb on - strandat 720.349 kb on - strandat 720.349 kb on - strandat 720.349 kb on - strandat 720.349 kb on - strandat 720.349 kb on - strandat 720.349 kb on - strandat 720.349 kb on - strandat 720.349 kb on - strandat 720.350 kb on + strandat 720.355 kb on + strandat 720.396 kb on - strand, within CCNA_R0010at 720.424 kb on - strand, within CCNA_R0010at 720.429 kb on - strand, within CCNA_R0010at 720.432 kb on - strand, within CCNA_R0010at 720.437 kb on + strandat 720.442 kb on + strandat 720.454 kb on + strandat 720.454 kb on + strandat 720.454 kb on + strandat 720.462 kb on - strandat 720.462 kb on - strandat 720.468 kb on + strandat 720.474 kb on + strandat 720.483 kb on + strandat 720.483 kb on + strandat 720.533 kb on - strandat 720.541 kb on + strandat 720.565 kb on + strandat 720.565 kb on + strandat 720.573 kb on + strandat 720.573 kb on - strandat 720.573 kb on - strandat 720.599 kb on + strandat 720.599 kb on + strandat 720.639 kb on + strandat 720.644 kb on + strandat 720.644 kb on + strandat 720.653 kb on + strandat 720.717 kb on - strand, within CCNA_00664at 720.746 kb on + strand, within CCNA_00664at 720.761 kb on + strand, within CCNA_00664at 720.762 kb on + strand, within CCNA_00664at 720.768 kb on + strand, within CCNA_00664at 720.779 kb on + strand, within CCNA_00664at 720.830 kb on - strand, within CCNA_00664at 720.896 kb on + strand, within CCNA_00664at 720.904 kb on - strand, within CCNA_00664at 720.928 kb on - strand, within CCNA_00664at 721.032 kb on + strand, within CCNA_00664at 721.052 kb on - strand, within CCNA_00664at 721.052 kb on - strand, within CCNA_00664at 721.101 kb on + strand, within CCNA_00664at 721.109 kb on - strand, within CCNA_00664at 721.109 kb on - strand, within CCNA_00664at 721.109 kb on - strand, within CCNA_00664at 721.130 kb on - strand, within CCNA_00664at 721.150 kb on + strand, within CCNA_00664at 721.169 kb on + strand, within CCNA_00664at 721.197 kb on - strand, within CCNA_00664at 721.211 kb on + strand, within CCNA_00664at 721.251 kb on - strand, within CCNA_00664at 721.275 kb on + strand, within CCNA_00664at 721.292 kb on + strand, within CCNA_00664at 721.292 kb on + strand, within CCNA_00664at 721.300 kb on - strand, within CCNA_00664at 721.300 kb on - strand, within CCNA_00664at 721.300 kb on - strand, within CCNA_00664at 721.315 kb on + strand, within CCNA_00664at 721.318 kb on + strand, within CCNA_00664at 721.318 kb on + strand, within CCNA_00664at 721.358 kb on - strand, within CCNA_00664at 721.382 kb on + strand, within CCNA_00664at 721.404 kb on + strand, within CCNA_00664at 721.412 kb on - strand, within CCNA_00664at 721.412 kb on - strand, within CCNA_00664at 721.433 kb on + strand, within CCNA_00664

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.00005 mg/ml
remove
719,373 - CCNA_00662 0.45 +1.5
719,378 + CCNA_00662 0.46 -1.0
719,396 - CCNA_00662 0.51 +0.4
719,396 - CCNA_00662 0.51 +1.0
719,408 - CCNA_00662 0.55 +1.2
719,417 + CCNA_00662 0.57 -0.3
719,448 + CCNA_00662 0.66 -0.5
719,456 - CCNA_00662 0.69 +0.7
719,484 - CCNA_00662 0.77 +0.2
719,487 + CCNA_00662 0.78 -1.7
719,506 + CCNA_00662 0.83 -1.8
719,509 - CCNA_00662 0.84 -0.4
719,572 - +1.2
719,592 + +0.4
719,604 - +0.5
719,605 + -1.4
719,638 - +0.4
719,655 + CCNA_00663 0.14 +0.4
719,655 + CCNA_00663 0.14 -1.4
719,655 + CCNA_00663 0.14 -1.2
719,655 + CCNA_00663 0.14 +2.2
719,660 + CCNA_00663 0.15 +0.2
719,663 - CCNA_00663 0.16 +0.3
719,663 - CCNA_00663 0.16 +0.4
719,668 - CCNA_00663 0.18 -0.9
719,695 + CCNA_00663 0.26 +0.6
719,695 + CCNA_00663 0.26 -0.0
719,703 - CCNA_00663 0.28 +3.5
719,703 - CCNA_00663 0.28 -0.2
719,721 - CCNA_00663 0.34 -1.8
719,721 - CCNA_00663 0.34 -0.7
719,743 - CCNA_00663 0.40 -0.6
719,744 - CCNA_00663 0.40 +0.8
719,746 - CCNA_00663 0.41 -0.3
719,775 + CCNA_00663 0.50 +0.8
719,790 - CCNA_00663 0.54 -1.3
719,799 - CCNA_00663 0.57 -2.5
719,816 + CCNA_00663 0.62 +0.7
719,819 - CCNA_00663 0.63 -0.3
719,846 + CCNA_00663 0.71 +0.4
719,973 + -0.3
719,973 + -1.6
719,973 + -2.2
719,981 - +1.5
719,981 - +1.6
719,981 - +1.7
720,023 + +0.4
720,024 + +1.6
720,034 + -1.0
720,034 + -1.4
720,042 - -2.1
720,042 - -0.3
720,042 - -1.4
720,050 - -2.1
720,050 - -2.0
720,050 - -0.2
720,068 + +0.4
720,128 - -0.3
720,136 - -0.2
720,147 + -3.3
720,161 + -1.3
720,209 - -1.1
720,256 + -1.2
720,326 - +1.4
720,326 - +0.8
720,327 - +0.8
720,341 + -0.2
720,341 + +0.1
720,341 + +1.6
720,341 + -0.6
720,349 - +1.0
720,349 - -0.2
720,349 - +0.2
720,349 - +1.2
720,349 - +1.4
720,349 - +1.2
720,349 - +0.5
720,349 - +0.3
720,349 - -0.7
720,350 + -0.2
720,355 + -2.5
720,396 - CCNA_R0010 0.40 -0.2
720,424 - CCNA_R0010 0.77 -0.9
720,429 - CCNA_R0010 0.83 -0.3
720,432 - CCNA_R0010 0.87 -0.8
720,437 + -1.4
720,442 + -1.5
720,454 + -0.0
720,454 + -0.4
720,454 + +0.8
720,462 - +1.6
720,462 - +1.1
720,468 + -0.8
720,474 + -0.3
720,483 + -0.6
720,483 + +0.5
720,533 - -0.3
720,541 + -1.8
720,565 + +1.1
720,565 + -0.5
720,573 + +1.7
720,573 - +0.3
720,573 - +0.2
720,599 + +0.2
720,599 + +0.6
720,639 + +1.4
720,644 + -1.0
720,644 + -0.9
720,653 + -0.9
720,717 - CCNA_00664 0.15 -1.7
720,746 + CCNA_00664 0.17 +0.4
720,761 + CCNA_00664 0.19 -0.2
720,762 + CCNA_00664 0.19 -2.5
720,768 + CCNA_00664 0.19 +1.0
720,779 + CCNA_00664 0.20 +0.2
720,830 - CCNA_00664 0.24 -1.6
720,896 + CCNA_00664 0.29 -0.6
720,904 - CCNA_00664 0.30 -1.6
720,928 - CCNA_00664 0.32 +0.2
721,032 + CCNA_00664 0.40 +0.1
721,052 - CCNA_00664 0.42 -0.8
721,052 - CCNA_00664 0.42 +0.6
721,101 + CCNA_00664 0.46 -0.2
721,109 - CCNA_00664 0.46 -0.3
721,109 - CCNA_00664 0.46 -0.1
721,109 - CCNA_00664 0.46 -0.1
721,130 - CCNA_00664 0.48 +0.2
721,150 + CCNA_00664 0.50 +0.1
721,169 + CCNA_00664 0.51 +0.2
721,197 - CCNA_00664 0.53 -0.0
721,211 + CCNA_00664 0.54 -0.0
721,251 - CCNA_00664 0.58 -0.3
721,275 + CCNA_00664 0.60 +0.2
721,292 + CCNA_00664 0.61 -0.5
721,292 + CCNA_00664 0.61 -0.5
721,300 - CCNA_00664 0.62 -0.2
721,300 - CCNA_00664 0.62 -0.2
721,300 - CCNA_00664 0.62 +0.7
721,315 + CCNA_00664 0.63 +0.6
721,318 + CCNA_00664 0.63 +0.7
721,318 + CCNA_00664 0.63 -0.1
721,358 - CCNA_00664 0.66 -1.1
721,382 + CCNA_00664 0.68 +2.2
721,404 + CCNA_00664 0.70 +0.9
721,412 - CCNA_00664 0.70 -1.2
721,412 - CCNA_00664 0.70 +1.6
721,433 + CCNA_00664 0.72 +1.1

Or see this region's nucleotide sequence