Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03392

Experiment: PYE with Tetracycline 0.00005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.00005 mg/ml
3,562,795	-		CCNA_03389	0.86	-1.7
3,562,822	+		CCNA_03389	0.89	+0.4
3,562,830	-				-1.4
3,562,830	-				+0.2
3,562,830	-				+0.2
3,562,830	-				-0.9
3,562,847	+				+0.0
3,562,847	+				+0.1
3,562,855	-				-0.2
3,562,873	+				+0.9
3,562,974	-				+0.5
3,562,999	-				-0.3
3,563,003	+				-0.1
3,563,003	+				-1.6
3,563,003	+				-0.7
3,563,003	+				+0.7
3,563,010	+				-1.2
3,563,011	-				-0.3
3,563,011	-				-0.5
3,563,011	-				+0.2
3,563,011	-				+1.4
3,563,011	-				-0.8
3,563,022	+				-1.3
3,563,030	-				-0.6
3,563,086	+		CCNA_03390	0.12	-2.5
3,563,130	+		CCNA_03390	0.21	+0.2
3,563,130	+		CCNA_03390	0.21	-1.5
3,563,133	-		CCNA_03390	0.22	-0.9
3,563,136	+		CCNA_03390	0.22	-0.9
3,563,138	-		CCNA_03390	0.23	+0.8
3,563,138	-		CCNA_03390	0.23	-0.9
3,563,155	+		CCNA_03390	0.26	-0.5
3,563,155	+		CCNA_03390	0.26	-2.1
3,563,155	+		CCNA_03390	0.26	+0.8
3,563,155	+		CCNA_03390	0.26	+0.5
3,563,155	+		CCNA_03390	0.26	+1.1
3,563,155	+		CCNA_03390	0.26	-1.9
3,563,158	-		CCNA_03390	0.27	-1.9
3,563,163	-		CCNA_03390	0.28	+1.0
3,563,163	-		CCNA_03390	0.28	-0.0
3,563,163	-		CCNA_03390	0.28	-1.8
3,563,163	-		CCNA_03390	0.28	+0.1
3,563,191	+		CCNA_03390	0.33	+0.4
3,563,192	-		CCNA_03390	0.34	+1.7
3,563,236	+		CCNA_03390	0.42	+0.9
3,563,236	+		CCNA_03390	0.42	-1.0
3,563,236	+		CCNA_03390	0.42	+0.5
3,563,307	-		CCNA_03390	0.56	-0.1
3,563,316	+		CCNA_03390	0.58	-1.1
3,563,316	+		CCNA_03390	0.58	-0.4
3,563,324	-		CCNA_03390	0.60	-0.1
3,563,325	-		CCNA_03390	0.60	+2.2
3,563,328	+		CCNA_03390	0.61	-0.6
3,563,328	+		CCNA_03390	0.61	-0.0
3,563,328	+		CCNA_03390	0.61	-1.4
3,563,336	-		CCNA_03390	0.62	-0.5
3,563,341	-		CCNA_03390	0.63	+0.0
3,563,350	-		CCNA_03390	0.65	-2.5
3,563,350	-		CCNA_03390	0.65	-2.3
3,563,392	+		CCNA_03390	0.73	+2.1
3,563,435	-		CCNA_03390	0.82	-0.9
3,563,500	+				+0.2
3,563,518	+				-0.8
3,563,539	+				+1.3
3,563,539	+				+1.5
3,563,548	+		CCNA_03391	0.10	+1.6
3,563,566	+		CCNA_03391	0.17	+1.4
3,563,567	+		CCNA_03391	0.18	+0.9
3,563,602	-		CCNA_03391	0.33	-1.6
3,563,611	+		CCNA_03391	0.36	+1.1
3,563,612	-		CCNA_03391	0.37	-2.2
3,563,614	-		CCNA_03391	0.38	-1.0
3,563,640	+		CCNA_03391	0.48	+2.2
3,563,640	+		CCNA_03391	0.48	+1.9
3,563,640	+		CCNA_03391	0.48	+2.0
3,563,640	+		CCNA_03391	0.48	+1.8
3,563,647	-		CCNA_03391	0.51	+0.8
3,563,648	-		CCNA_03391	0.52	-0.8
3,563,648	-		CCNA_03391	0.52	-2.2
3,563,648	-		CCNA_03391	0.52	-0.3
3,563,649	-		CCNA_03391	0.52	-0.0
3,563,670	-		CCNA_03391	0.61	+0.6
3,563,683	+		CCNA_03391	0.66	+0.8
3,563,683	+		CCNA_03391	0.66	+1.3
3,563,683	+		CCNA_03391	0.66	+1.3
3,563,683	+		CCNA_03391	0.66	+1.5
3,563,683	+		CCNA_03391	0.66	+1.2
3,563,683	+		CCNA_03391	0.66	+1.7
3,563,683	+		CCNA_03391	0.66	+1.2
3,563,683	+		CCNA_03391	0.66	+1.2
3,563,691	-				+0.9
3,563,691	-		CCNA_03391	0.70	+0.8
3,563,691	-		CCNA_03391	0.70	+0.9
3,563,691	-		CCNA_03391	0.70	+1.5
3,563,691	-		CCNA_03391	0.70	+0.9
3,563,691	-		CCNA_03391	0.70	+0.0
3,563,691	-		CCNA_03391	0.70	+0.3
3,563,691	-				-0.1
3,563,707	+		CCNA_03391	0.76	+1.1
3,563,707	+		CCNA_03391	0.76	+1.3
3,563,715	-		CCNA_03391	0.80	-0.2
3,563,744	+				-0.0
3,563,752	-				+0.6
3,563,827	+				-1.2
3,563,829	+				+0.2
3,563,834	+				+0.6
3,563,834	+				-2.0
3,563,835	-				-0.5
3,563,978	+		CCNA_03392	0.20	-1.7
3,564,038	+		CCNA_03392	0.26	+0.4
3,564,074	+		CCNA_03392	0.29	-0.6
3,564,099	+		CCNA_03392	0.31	-0.5
3,564,099	+		CCNA_03392	0.31	+0.1
3,564,099	+		CCNA_03392	0.31	-1.8
3,564,099	+		CCNA_03392	0.31	-1.8
3,564,102	-		CCNA_03392	0.31	-0.4
3,564,107	-		CCNA_03392	0.32	-0.2
3,564,160	+		CCNA_03392	0.37	-0.9
3,564,162	-		CCNA_03392	0.37	-2.1
3,564,168	-		CCNA_03392	0.38	+0.1
3,564,191	-		CCNA_03392	0.40	-0.4
3,564,316	-		CCNA_03392	0.51	-1.6
3,564,366	-		CCNA_03392	0.56	-0.2
3,564,368	+		CCNA_03392	0.56	-0.8
3,564,372	-		CCNA_03392	0.56	-0.8
3,564,378	+				+0.7
3,564,387	-		CCNA_03392	0.58	-0.6
3,564,405	-		CCNA_03392	0.59	+1.3
3,564,443	+		CCNA_03392	0.63	-0.1
3,564,444	+		CCNA_03392	0.63	-0.9
3,564,444	+		CCNA_03392	0.63	-0.8
3,564,461	-		CCNA_03392	0.65	-1.3
3,564,471	+		CCNA_03392	0.65	-1.8
3,564,522	+		CCNA_03392	0.70	-0.5
3,564,530	-		CCNA_03392	0.71	+0.4
3,564,530	-		CCNA_03392	0.71	-0.8
3,564,567	+		CCNA_03392	0.74	-2.1
3,564,575	-		CCNA_03392	0.75	-0.7
3,564,615	+		CCNA_03392	0.79	-2.2
3,564,659	-		CCNA_03392	0.83	-1.0
3,564,799	-				-0.7
3,564,854	+				+0.4
3,564,881	+				-1.6
3,564,924	+		CCNA_03393	0.15	-1.5
3,564,932	-		CCNA_03393	0.16	-1.6
3,564,949	-		CCNA_03393	0.20	-0.6
3,564,949	-		CCNA_03393	0.20	+0.5
3,565,013	-		CCNA_03393	0.33	-0.9
3,565,029	+		CCNA_03393	0.36	-1.9
3,565,029	+		CCNA_03393	0.36	-0.3
3,565,037	-		CCNA_03393	0.38	-1.2
3,565,037	-		CCNA_03393	0.38	-1.1
3,565,043	+		CCNA_03393	0.39	-0.5
3,565,046	-		CCNA_03393	0.40	-2.3
3,565,051	-		CCNA_03393	0.41	-0.7
3,565,051	-		CCNA_03393	0.41	+0.7
3,565,059	+		CCNA_03393	0.42	-1.1
3,565,059	+		CCNA_03393	0.42	-1.2
3,565,067	-		CCNA_03393	0.44	-1.3
3,565,067	-		CCNA_03393	0.44	+0.7
3,565,067	-		CCNA_03393	0.44	+2.1
3,565,067	-		CCNA_03393	0.44	-0.6
3,565,067	-		CCNA_03393	0.44	-0.3
3,565,067	-		CCNA_03393	0.44	-0.2
3,565,067	-		CCNA_03393	0.44	-0.8
3,565,067	-		CCNA_03393	0.44	+1.0
3,565,067	-		CCNA_03393	0.44	+1.6
3,565,067	-		CCNA_03393	0.44	-1.6
3,565,156	+		CCNA_03393	0.62	-1.1
3,565,164	-		CCNA_03393	0.64	-0.8
3,565,221	+		CCNA_03393	0.75	+0.2
3,565,235	-		CCNA_03393	0.78	-0.1
3,565,256	+		CCNA_03393	0.82	+1.3
3,565,315	-				-0.6
3,565,319	+				-1.4
3,565,360	-				-0.1
3,565,397	-				+2.0
3,565,408	-				+2.2
3,565,414	+				-1.6
3,565,424	+				-0.7
3,565,432	-				+1.0
3,565,448	+				-0.0
3,565,448	+				-0.5
3,565,448	+				-1.5
3,565,448	+				+0.1
3,565,456	-				-0.6
3,565,456	-				-1.8
3,565,456	-				-2.9
3,565,457	+				-0.2
3,565,478	-				-0.6
3,565,479	+				+0.9
3,565,487	-				-0.7
3,565,487	-				-0.3
3,565,503	-				-0.8
3,565,527	+				+0.2
3,565,537	+				-0.9
3,565,537	+				+1.7
3,565,545	-				-0.6
3,565,593	+				+0.3
3,565,593	+				+0.4
3,565,597	+				-0.6
3,565,624	+				+1.2
3,565,673	-		CCNA_03394	0.14	-1.5
3,565,688	+		CCNA_03394	0.16	+0.3
3,565,688	+		CCNA_03394	0.16	+0.5
3,565,698	+		CCNA_03394	0.18	+0.3
3,565,703	+		CCNA_03394	0.18	+0.2
3,565,743	+		CCNA_03394	0.24	+0.9
3,565,755	+		CCNA_03394	0.25	+0.8
3,565,808	-		CCNA_03394	0.33	-0.6
3,565,843	+		CCNA_03394	0.38	+0.3