Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02948

Experiment: PYE with Tetracycline 0.00005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.00005 mg/ml
3,107,563	-				+1.7
3,107,573	+				+1.0
3,107,573	+				+0.3
3,107,573	+				+1.1
3,107,578	+				+1.1
3,107,581	-				-0.6
3,107,581	-				+2.5
3,107,608	+				+0.5
3,107,624	+				+0.8
3,107,625	+				+1.1
3,107,631	-				+0.1
3,107,631	-				-1.2
3,107,701	+		CCNA_02947	0.14	+0.8
3,107,739	+		CCNA_02947	0.18	+0.5
3,107,739	+		CCNA_02947	0.18	+0.3
3,107,739	+		CCNA_02947	0.18	+1.0
3,107,739	+		CCNA_02947	0.18	+0.6
3,107,762	+		CCNA_02947	0.21	+0.6
3,107,762	+		CCNA_02947	0.21	+1.0
3,107,762	+		CCNA_02947	0.21	+0.7
3,107,762	+		CCNA_02947	0.21	+0.0
3,107,772	+		CCNA_02947	0.22	+1.7
3,107,772	+		CCNA_02947	0.22	-0.2
3,107,797	+		CCNA_02947	0.24	+1.2
3,107,802	+		CCNA_02947	0.25	+0.6
3,107,805	-		CCNA_02947	0.25	+0.4
3,107,805	-		CCNA_02947	0.25	-1.2
3,107,817	+		CCNA_02947	0.26	+0.9
3,107,822	+		CCNA_02947	0.27	-0.2
3,107,822	+		CCNA_02947	0.27	-0.6
3,107,825	-		CCNA_02947	0.27	-0.4
3,107,886	-		CCNA_02947	0.33	-0.0
3,107,920	-		CCNA_02947	0.37	+1.3
3,107,963	-		CCNA_02947	0.41	-0.2
3,107,976	+		CCNA_02947	0.42	+0.5
3,107,984	-		CCNA_02947	0.43	-0.7
3,107,986	+		CCNA_02947	0.43	+1.2
3,107,986	+				+0.8
3,108,001	+		CCNA_02947	0.45	+1.3
3,108,021	+		CCNA_02947	0.47	+0.5
3,108,036	+		CCNA_02947	0.48	-0.3
3,108,049	+		CCNA_02947	0.50	+1.1
3,108,049	+		CCNA_02947	0.50	+0.8
3,108,114	+		CCNA_02947	0.56	+0.8
3,108,122	-		CCNA_02947	0.57	+0.7
3,108,122	-		CCNA_02947	0.57	-0.3
3,108,122	-		CCNA_02947	0.57	+0.1
3,108,147	+		CCNA_02947	0.59	-0.1
3,108,169	+		CCNA_02947	0.62	-0.7
3,108,205	-		CCNA_02947	0.65	-0.2
3,108,213	+		CCNA_02947	0.66	+1.4
3,108,258	-		CCNA_02947	0.71	-0.1
3,108,276	+		CCNA_02947	0.73	+0.8
3,108,310	+		CCNA_02947	0.76	+0.3
3,108,311	+		CCNA_02947	0.76	+0.3
3,108,316	+		CCNA_02947	0.77	+0.5
3,108,316	+		CCNA_02947	0.77	+0.3
3,108,316	+				+1.1
3,108,319	-		CCNA_02947	0.77	-1.2
3,108,319	-		CCNA_02947	0.77	+0.8
3,108,324	-		CCNA_02947	0.77	+0.9
3,108,324	-		CCNA_02947	0.77	+1.3
3,108,338	+		CCNA_02947	0.79	-0.1
3,108,360	-		CCNA_02947	0.81	-0.3
3,108,366	+		CCNA_02947	0.82	-1.2
3,108,366	+		CCNA_02947	0.82	+1.1
3,108,378	+		CCNA_02947	0.83	+1.2
3,108,400	-		CCNA_02947	0.85	-0.2
3,108,426	+		CCNA_02947	0.88	+0.4
3,108,434	-		CCNA_02947	0.88	+0.9
3,108,461	+				+0.4
3,108,506	+				+0.4
3,108,530	+				-0.2
3,108,551	-				-1.4
3,108,590	+		CCNA_02948	0.13	-1.1
3,108,590	+		CCNA_02948	0.13	-1.6
3,108,590	+		CCNA_02948	0.13	-0.6
3,108,598	-		CCNA_02948	0.15	+0.5
3,108,600	+		CCNA_02948	0.15	-1.7
3,108,608	-		CCNA_02948	0.17	-1.3
3,108,613	+		CCNA_02948	0.19	-1.4
3,108,613	+		CCNA_02948	0.19	-0.8
3,108,621	-		CCNA_02948	0.21	-0.0
3,108,625	+		CCNA_02948	0.22	-0.9
3,108,651	+		CCNA_02948	0.29	-0.5
3,108,655	+		CCNA_02948	0.30	+0.5
3,108,663	-		CCNA_02948	0.33	-1.9
3,108,663	-		CCNA_02948	0.33	-1.8
3,108,752	-		CCNA_02948	0.57	-1.7
3,108,759	+		CCNA_02948	0.59	-1.0
3,108,760	+		CCNA_02948	0.59	-0.2
3,108,765	+		CCNA_02948	0.60	-0.9
3,108,831	+		CCNA_02948	0.78	+0.7
3,108,839	-		CCNA_02948	0.81	-1.9
3,108,839	-		CCNA_02948	0.81	-1.4
3,108,839	-		CCNA_02948	0.81	-0.9
3,108,878	+				+1.3
3,108,878	+				+0.8
3,108,886	-				-1.6
3,108,886	-				-0.8
3,108,903	+				+1.0
3,108,917	-				-1.0
3,108,923	+				-0.4
3,108,926	+				-0.4
3,108,952	-				-0.7
3,108,954	+				-1.0
3,108,978	-				-0.4
3,109,009	+				+0.2
3,109,010	-				-2.0
3,109,023	+				+0.1
3,109,053	-				-0.8
3,109,059	+				-1.2
3,109,067	-				+1.1
3,109,070	-				+2.0
3,109,114	-				+1.2
3,109,114	-				-0.1
3,109,114	-				+1.6
3,109,116	+				+1.1
3,109,124	-				-1.1
3,109,133	+				-2.5
3,109,133	+				+1.5
3,109,141	-				-0.2
3,109,158	-				+0.9
3,109,176	+				-2.2
3,109,185	-				-0.9
3,109,243	+				+0.8
3,109,321	-		CCNA_02949	0.12	+1.0
3,109,326	-		CCNA_02949	0.12	+0.3
3,109,398	-		CCNA_02949	0.23	-1.5
3,109,398	-		CCNA_02949	0.23	-0.6
3,109,402	+		CCNA_02949	0.24	+1.1
3,109,402	+		CCNA_02949	0.24	-0.0
3,109,402	+		CCNA_02949	0.24	+0.5
3,109,402	+		CCNA_02949	0.24	-1.1
3,109,410	-		CCNA_02949	0.25	-0.0
3,109,410	-		CCNA_02949	0.25	+0.6
3,109,415	-		CCNA_02949	0.26	+1.2
3,109,466	+		CCNA_02949	0.34	+0.9
3,109,476	+		CCNA_02949	0.35	+2.9
3,109,489	-		CCNA_02949	0.38	-0.9
3,109,491	+		CCNA_02949	0.38	+1.2
3,109,491	+		CCNA_02949	0.38	+0.3
3,109,491	+		CCNA_02949	0.38	+0.6
3,109,499	-		CCNA_02949	0.39	-0.8
3,109,505	-		CCNA_02949	0.40	-0.4
3,109,522	+		CCNA_02949	0.43	+1.0
3,109,537	-		CCNA_02949	0.45	-2.1
3,109,554	+		CCNA_02949	0.48	+0.9
3,109,566	-		CCNA_02949	0.49	+1.1
3,109,575	+		CCNA_02949	0.51	+0.3
3,109,575	+		CCNA_02949	0.51	+1.6
3,109,593	-		CCNA_02949	0.54	+0.1
3,109,642	+		CCNA_02949	0.61	-0.8
3,109,650	-		CCNA_02949	0.62	+0.5
3,109,694	-		CCNA_02949	0.69	+0.4
3,109,702	-		CCNA_02949	0.70	+0.1
3,109,717	-		CCNA_02949	0.73	-0.5
3,109,743	+		CCNA_02949	0.77	+0.5
3,109,743	+		CCNA_02949	0.77	+0.2
3,109,743	+		CCNA_02949	0.77	+0.2
3,109,743	+		CCNA_02949	0.77	-0.0
3,109,751	-		CCNA_02949	0.78	-1.4
3,109,751	-		CCNA_02949	0.78	+0.3
3,109,751	-		CCNA_02949	0.78	-1.3
3,109,796	-		CCNA_02949	0.85	-0.2
3,109,808	+		CCNA_02949	0.87	+1.0
3,109,873	-				-1.4
3,109,897	+				-1.0