Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01832

Experiment: PYE with Tetracycline 0.00005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.00005 mg/ml
1,960,209	+		CCNA_01831	0.37	+2.8
1,960,209	+				+2.2
1,960,233	+		CCNA_01831	0.38	-0.4
1,960,241	-		CCNA_01831	0.39	-0.4
1,960,241	-		CCNA_01831	0.39	-0.9
1,960,247	+		CCNA_01831	0.39	+0.9
1,960,251	+		CCNA_01831	0.39	-1.9
1,960,260	+		CCNA_01831	0.40	-0.2
1,960,285	+				+0.4
1,960,285	+		CCNA_01831	0.42	-1.3
1,960,296	+		CCNA_01831	0.42	+0.1
1,960,391	-		CCNA_01831	0.49	-0.7
1,960,418	+		CCNA_01831	0.50	+0.6
1,960,457	-		CCNA_01831	0.53	+1.6
1,960,461	-				+0.2
1,960,469	+		CCNA_01831	0.54	+2.2
1,960,508	-		CCNA_01831	0.56	+0.1
1,960,528	+		CCNA_01831	0.58	-1.3
1,960,541	-		CCNA_01831	0.58	+0.8
1,960,624	-		CCNA_01831	0.64	+1.5
1,960,648	+		CCNA_01831	0.65	+1.1
1,960,668	+		CCNA_01831	0.67	+1.2
1,960,683	+		CCNA_01831	0.68	-2.5
1,960,683	+		CCNA_01831	0.68	+0.9
1,960,683	+		CCNA_01831	0.68	-1.1
1,960,683	+		CCNA_01831	0.68	+0.1
1,960,683	+		CCNA_01831	0.68	-0.8
1,960,691	-		CCNA_01831	0.68	-0.2
1,960,691	-		CCNA_01831	0.68	-1.6
1,960,691	-		CCNA_01831	0.68	+0.9
1,960,691	-		CCNA_01831	0.68	-0.8
1,960,691	-		CCNA_01831	0.68	-1.2
1,960,703	+		CCNA_01831	0.69	-0.8
1,960,711	-		CCNA_01831	0.70	-0.9
1,960,763	-		CCNA_01831	0.73	-1.7
1,960,835	-		CCNA_01831	0.78	-1.3
1,960,983	+		CCNA_01831	0.87	+1.5
1,961,010	+		CCNA_01831	0.89	+0.9
1,961,010	+		CCNA_01831	0.89	-0.9
1,961,010	+		CCNA_01831	0.89	-0.3
1,961,010	+		CCNA_01831	0.89	+1.2
1,961,010	+		CCNA_01831	0.89	-1.5
1,961,010	+		CCNA_01831	0.89	+0.1
1,961,010	+		CCNA_01831	0.89	-0.2
1,961,010	+		CCNA_01831	0.89	+0.4
1,961,010	+		CCNA_01831	0.89	-0.4
1,961,010	+		CCNA_01831	0.89	-0.9
1,961,010	+		CCNA_01831	0.89	-0.9
1,961,018	-		CCNA_01831	0.90	+1.8
1,961,018	-		CCNA_01831	0.90	-0.2
1,961,018	-		CCNA_01831	0.90	-1.1
1,961,018	-		CCNA_01831	0.90	+0.6
1,961,018	-		CCNA_01831	0.90	-0.2
1,961,018	-		CCNA_01831	0.90	-0.2
1,961,018	-		CCNA_01831	0.90	-0.4
1,961,029	+				+0.2
1,961,033	-				-0.2
1,961,097	-				-2.3
1,961,139	-				-0.4
1,961,159	+				+0.8
1,961,222	-				+0.1
1,961,238	+				+0.4
1,961,295	+				-0.4
1,961,303	-				+0.7
1,961,304	-				-0.8
1,961,308	-				+0.4
1,961,319	-				-1.0
1,961,319	-				-1.2
1,961,319	-				-0.1
1,961,319	-				-2.1
1,961,324	-				-1.6
1,961,340	+				+0.8
1,961,353	+				+0.3
1,961,383	-				-0.8
1,961,428	-		CCNA_01832	0.10	-1.9
1,961,432	-		CCNA_01832	0.10	-0.8
1,961,455	+		CCNA_01832	0.11	-0.5
1,961,512	-		CCNA_01832	0.14	-0.2
1,961,512	-		CCNA_01832	0.14	-0.2
1,961,521	+		CCNA_01832	0.14	+1.1
1,961,559	+		CCNA_01832	0.16	-0.2
1,961,559	+		CCNA_01832	0.16	-0.5
1,961,566	+		CCNA_01832	0.16	-2.1
1,961,567	-		CCNA_01832	0.16	-0.8
1,961,612	+		CCNA_01832	0.18	-1.2
1,961,620	-		CCNA_01832	0.18	-0.6
1,961,623	+		CCNA_01832	0.19	+1.1
1,961,631	-		CCNA_01832	0.19	+0.2
1,961,682	-		CCNA_01832	0.21	-0.1
1,961,691	-		CCNA_01832	0.22	-0.0
1,961,769	-		CCNA_01832	0.25	-0.3
1,961,790	+		CCNA_01832	0.26	-0.8
1,961,790	+		CCNA_01832	0.26	+1.2
1,961,790	+		CCNA_01832	0.26	-0.9
1,961,790	+		CCNA_01832	0.26	-0.7
1,961,790	+		CCNA_01832	0.26	-1.5
1,961,790	+		CCNA_01832	0.26	-1.4
1,961,790	+		CCNA_01832	0.26	-1.8
1,961,790	+		CCNA_01832	0.26	-1.0
1,961,790	+		CCNA_01832	0.26	+0.3
1,961,790	+		CCNA_01832	0.26	+1.1
1,961,790	+		CCNA_01832	0.26	-0.9
1,961,790	+		CCNA_01832	0.26	-0.5
1,961,790	+		CCNA_01832	0.26	-0.8
1,961,797	+		CCNA_01832	0.26	-1.4
1,961,798	-		CCNA_01832	0.26	-0.9
1,961,798	-		CCNA_01832	0.26	-1.1
1,961,798	-		CCNA_01832	0.26	+2.6
1,961,798	-		CCNA_01832	0.26	-1.7
1,961,798	-		CCNA_01832	0.26	+0.1
1,961,798	-		CCNA_01832	0.26	-0.2
1,961,798	-		CCNA_01832	0.26	-0.0
1,961,798	-		CCNA_01832	0.26	-0.7
1,961,798	-		CCNA_01832	0.26	-1.9
1,961,798	-		CCNA_01832	0.26	-1.2
1,961,798	-		CCNA_01832	0.26	+0.6
1,961,891	+		CCNA_01832	0.30	+1.4
1,961,899	-		CCNA_01832	0.31	-2.1
1,961,913	+		CCNA_01832	0.31	-1.3
1,961,914	+		CCNA_01832	0.31	+0.4
1,961,914	-		CCNA_01832	0.31	-1.1
1,961,959	+		CCNA_01832	0.33	-0.2
1,961,979	+		CCNA_01832	0.34	+0.6
1,961,979	+		CCNA_01832	0.34	-0.6
1,961,987	-		CCNA_01832	0.35	+0.1
1,962,023	-		CCNA_01832	0.36	+0.5
1,962,027	+		CCNA_01832	0.36	-0.9
1,962,027	+		CCNA_01832	0.36	-1.1
1,962,046	+		CCNA_01832	0.37	+0.2
1,962,062	+		CCNA_01832	0.38	-2.3
1,962,076	+		CCNA_01832	0.38	+1.6
1,962,079	+		CCNA_01832	0.39	-1.5
1,962,087	-		CCNA_01832	0.39	-1.5
1,962,098	-		CCNA_01832	0.39	-0.5
1,962,113	-		CCNA_01832	0.40	+0.1
1,962,147	+		CCNA_01832	0.42	+0.6
1,962,163	+		CCNA_01832	0.42	-0.2
1,962,201	+		CCNA_01832	0.44	+0.5
1,962,224	+		CCNA_01832	0.45	-1.6
1,962,248	+		CCNA_01832	0.46	+0.2
1,962,248	+		CCNA_01832	0.46	-1.3
1,962,251	-		CCNA_01832	0.46	+1.8
1,962,256	-		CCNA_01832	0.46	-2.5
1,962,256	-		CCNA_01832	0.46	-0.6
1,962,256	-		CCNA_01832	0.46	-1.8
1,962,256	-		CCNA_01832	0.46	-0.9
1,962,256	-		CCNA_01832	0.46	-1.7
1,962,256	-		CCNA_01832	0.46	-0.9
1,962,309	+		CCNA_01832	0.49	+2.5
1,962,309	+				+1.2
1,962,309	+		CCNA_01832	0.49	-0.9
1,962,312	-		CCNA_01832	0.49	-0.9
1,962,317	-		CCNA_01832	0.49	-1.5
1,962,317	-		CCNA_01832	0.49	-1.0
1,962,317	-		CCNA_01832	0.49	-1.1
1,962,319	+		CCNA_01832	0.49	-1.6
1,962,324	+		CCNA_01832	0.49	+0.2
1,962,324	+		CCNA_01832	0.49	+0.4
1,962,328	-		CCNA_01832	0.49	-0.2
1,962,334	-		CCNA_01832	0.50	-0.4
1,962,351	+		CCNA_01832	0.50	-0.7
1,962,359	-		CCNA_01832	0.51	-0.4
1,962,381	+		CCNA_01832	0.52	+0.3
1,962,398	+		CCNA_01832	0.52	+0.3
1,962,427	-		CCNA_01832	0.54	-0.6
1,962,452	+		CCNA_01832	0.55	-2.2
1,962,459	+		CCNA_01832	0.55	-1.0
1,962,569	-		CCNA_01832	0.60	+3.2
1,962,581	+		CCNA_01832	0.60	+0.9
1,962,684	+		CCNA_01832	0.65	-0.6
1,962,732	+		CCNA_01832	0.67	-1.0
1,962,740	-		CCNA_01832	0.67	-1.5
1,962,740	-		CCNA_01832	0.67	+0.9
1,962,756	+		CCNA_01832	0.68	+1.0
1,962,796	-		CCNA_01832	0.70	-1.0
1,962,801	+		CCNA_01832	0.70	-1.3
1,962,824	-		CCNA_01832	0.71	+1.1
1,962,826	+		CCNA_01832	0.71	-1.0
1,963,013	+		CCNA_01832	0.79	+0.3
1,963,014	-		CCNA_01832	0.79	-1.0
1,963,022	-		CCNA_01832	0.80	+2.3
1,963,023	+		CCNA_01832	0.80	+0.1
1,963,031	-		CCNA_01832	0.80	+0.0
1,963,037	-		CCNA_01832	0.80	+0.5
1,963,041	+		CCNA_01832	0.81	-0.5
1,963,123	-		CCNA_01832	0.84	+0.4
1,963,143	-		CCNA_01832	0.85	-1.1
1,963,152	+		CCNA_01832	0.85	-0.1
1,963,152	+		CCNA_01832	0.85	-0.6
1,963,152	+		CCNA_01832	0.85	+0.1
1,963,160	-		CCNA_01832	0.86	-0.2
1,963,182	-		CCNA_01832	0.87	-0.9
1,963,182	-		CCNA_01832	0.87	-0.6
1,963,231	+		CCNA_01832	0.89	+1.2
1,963,236	+		CCNA_01832	0.89	-0.1
1,963,241	+		CCNA_01832	0.89	-0.9
1,963,244	-		CCNA_01832	0.89	+1.2
1,963,244	-		CCNA_01832	0.89	-0.1
1,963,255	-		CCNA_01832	0.90	+1.0
1,963,257	+				+0.2
1,963,257	+				-1.5
1,963,257	+				-1.4
1,963,257	+				-0.9
1,963,257	+				+1.2
1,963,260	-				+1.7
1,963,262	+				+0.8
1,963,262	+				-1.1
1,963,265	-				+1.4
1,963,265	-				-1.5
1,963,265	-				-1.5
1,963,334	+				+0.5
1,963,334	+				-0.2
1,963,357	+				+2.4
1,963,367	-				+0.5
1,963,377	+				-0.7
1,963,385	-				+0.2
1,963,386	-				-0.4
1,963,438	+				-0.2
1,963,438	+				-0.2
1,963,441	+				+0.0
1,963,446	-				+0.0
1,963,600	-				+1.9
1,963,607	+				-0.2
1,963,675	+		CCNA_01833	0.13	+0.3
1,963,727	-		CCNA_01833	0.17	-1.4
1,963,739	+		CCNA_01833	0.18	-0.0
1,963,742	-		CCNA_01833	0.18	-1.8
1,963,742	-		CCNA_01833	0.18	-0.1
1,963,752	-		CCNA_01833	0.19	-1.2
1,963,784	+		CCNA_01833	0.21	-1.7
1,963,804	+		CCNA_01833	0.23	-0.1
1,963,809	+		CCNA_01833	0.23	+0.6
1,963,871	+		CCNA_01833	0.27	-0.9
1,963,913	+		CCNA_01833	0.30	-1.1
1,963,927	+		CCNA_01833	0.31	+0.4
1,963,949	-		CCNA_01833	0.33	-0.4
1,963,970	-		CCNA_01833	0.34	+0.8
1,963,997	-		CCNA_01833	0.36	+0.4
1,964,050	-		CCNA_01833	0.40	-1.0
1,964,050	-		CCNA_01833	0.40	-1.6
1,964,054	+		CCNA_01833	0.40	-0.2
1,964,054	+		CCNA_01833	0.40	-0.9
1,964,054	+		CCNA_01833	0.40	-0.1
1,964,062	-		CCNA_01833	0.41	-0.9
1,964,066	+		CCNA_01833	0.41	+1.2
1,964,066	+		CCNA_01833	0.41	-0.7
1,964,066	+				+0.2
1,964,074	-		CCNA_01833	0.42	-0.9
1,964,148	+		CCNA_01833	0.47	+1.2
1,964,148	+		CCNA_01833	0.47	-0.1
1,964,161	-		CCNA_01833	0.48	+0.4
1,964,172	+		CCNA_01833	0.49	-0.4
1,964,210	-		CCNA_01833	0.51	+1.8
1,964,227	-		CCNA_01833	0.53	-0.0
1,964,252	-		CCNA_01833	0.54	-1.4
1,964,261	+		CCNA_01833	0.55	-0.4
1,964,269	-		CCNA_01833	0.56	-0.4
1,964,286	+		CCNA_01833	0.57	+1.2
1,964,289	-		CCNA_01833	0.57	+1.0
1,964,302	+		CCNA_01833	0.58	+1.0
1,964,320	-		CCNA_01833	0.59	-1.5
1,964,322	+		CCNA_01833	0.59	-0.2
1,964,322	+		CCNA_01833	0.59	+0.3
1,964,330	-		CCNA_01833	0.60	+2.6
1,964,357	-		CCNA_01833	0.62	+0.3
1,964,364	+		CCNA_01833	0.62	+0.8
1,964,372	-		CCNA_01833	0.63	-0.8
1,964,399	+		CCNA_01833	0.65	+0.6
1,964,399	+		CCNA_01833	0.65	-0.9
1,964,399	+		CCNA_01833	0.65	+1.7
1,964,402	-		CCNA_01833	0.65	+2.6
1,964,408	-		CCNA_01833	0.65	+1.6
1,964,435	+		CCNA_01833	0.67	-0.4
1,964,443	-		CCNA_01833	0.68	+1.6
1,964,443	-		CCNA_01833	0.68	-0.1