Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00957

Experiment: PYE with Tetracycline 0.00005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Tetracycline 0.00005 mg/ml
1,033,514	-		CCNA_00956	0.56	+0.3
1,033,523	+		CCNA_00956	0.56	+0.4
1,033,523	+		CCNA_00956	0.56	+0.4
1,033,523	+		CCNA_00956	0.56	+0.6
1,033,523	+		CCNA_00956	0.56	-0.9
1,033,550	-		CCNA_00956	0.58	+0.3
1,033,574	-		CCNA_00956	0.59	-0.1
1,033,644	-		CCNA_00956	0.62	+0.2
1,033,649	-		CCNA_00956	0.62	-0.1
1,033,650	+		CCNA_00956	0.62	+1.6
1,033,650	+		CCNA_00956	0.62	+0.8
1,033,658	-		CCNA_00956	0.63	+1.3
1,033,658	-		CCNA_00956	0.63	+0.4
1,033,669	+		CCNA_00956	0.63	+1.0
1,033,674	+		CCNA_00956	0.64	+0.9
1,033,677	-		CCNA_00956	0.64	-1.7
1,033,726	+		CCNA_00956	0.66	+1.1
1,033,726	+		CCNA_00956	0.66	+1.6
1,033,726	+		CCNA_00956	0.66	+1.3
1,033,734	-		CCNA_00956	0.66	-1.6
1,033,794	+		CCNA_00956	0.69	+0.7
1,033,794	-		CCNA_00956	0.69	+1.3
1,033,794	-		CCNA_00956	0.69	-0.5
1,033,814	+		CCNA_00956	0.70	+0.1
1,033,829	+		CCNA_00956	0.71	+1.4
1,033,855	-		CCNA_00956	0.72	-1.0
1,033,878	+		CCNA_00956	0.73	+1.7
1,033,896	-		CCNA_00956	0.74	+0.8
1,033,929	+		CCNA_00956	0.76	+0.7
1,033,965	-		CCNA_00956	0.77	+1.6
1,034,056	-		CCNA_00956	0.82	-0.1
1,034,056	-		CCNA_00956	0.82	-2.2
1,034,111	+		CCNA_00956	0.84	+0.4
1,034,111	+		CCNA_00956	0.84	+0.6
1,034,119	-		CCNA_00956	0.85	+0.2
1,034,172	+		CCNA_00956	0.87	+1.3
1,034,175	-		CCNA_00956	0.87	-0.6
1,034,175	-		CCNA_00956	0.87	-0.0
1,034,177	+		CCNA_00956	0.88	+0.9
1,034,177	+		CCNA_00956	0.88	+1.5
1,034,177	+		CCNA_00956	0.88	+0.1
1,034,177	+		CCNA_00956	0.88	+1.0
1,034,177	+		CCNA_00956	0.88	+1.9
1,034,185	-		CCNA_00956	0.88	-0.3
1,034,190	+		CCNA_00956	0.88	-0.4
1,034,280	-				+2.9
1,034,286	+				+0.9
1,034,286	+				+0.1
1,034,286	+				+1.5
1,034,291	+				-0.6
1,034,320	+				+0.7
1,034,395	+				+0.7
1,034,414	+				+0.2
1,034,414	+				+1.3
1,034,414	+				+0.8
1,034,493	+				+1.2
1,034,566	+				+0.6
1,034,574	-				-1.2
1,034,574	-				-0.7
1,034,584	+				-0.5
1,034,584	+				-1.3
1,034,592	-				+0.1
1,034,594	+				+0.2
1,034,603	-				-1.4
1,034,608	-				-2.0
1,034,614	+				-0.7
1,034,629	-		CCNA_00957	0.10	-0.5
1,034,714	-		CCNA_00957	0.16	-2.1
1,034,771	+		CCNA_00957	0.20	+1.3
1,034,777	+		CCNA_00957	0.20	-0.1
1,034,777	+		CCNA_00957	0.20	-0.9
1,034,824	+		CCNA_00957	0.23	-1.1
1,034,824	+		CCNA_00957	0.23	-0.5
1,034,893	+		CCNA_00957	0.28	-1.9
1,034,911	-		CCNA_00957	0.29	-0.2
1,034,919	+		CCNA_00957	0.30	+1.9
1,034,939	+		CCNA_00957	0.31	-0.8
1,034,939	+		CCNA_00957	0.31	+0.4
1,034,939	+		CCNA_00957	0.31	-0.4
1,034,942	-		CCNA_00957	0.31	+0.3
1,034,962	+		CCNA_00957	0.33	-2.2
1,034,997	+		CCNA_00957	0.35	+0.9
1,035,037	+		CCNA_00957	0.38	+1.5
1,035,037	+		CCNA_00957	0.38	+0.1
1,035,048	+		CCNA_00957	0.38	+0.1
1,035,048	+		CCNA_00957	0.38	+0.6
1,035,065	+		CCNA_00957	0.40	+1.3
1,035,065	+		CCNA_00957	0.40	+0.2
1,035,073	-		CCNA_00957	0.40	-1.5
1,035,073	-		CCNA_00957	0.40	-0.7
1,035,073	-		CCNA_00957	0.40	-1.0
1,035,076	+		CCNA_00957	0.40	+0.0
1,035,078	-		CCNA_00957	0.40	-2.1
1,035,161	+		CCNA_00957	0.46	+0.2
1,035,206	-		CCNA_00957	0.49	-0.2
1,035,276	+		CCNA_00957	0.54	-1.1
1,035,278	+		CCNA_00957	0.54	-0.3
1,035,304	-		CCNA_00957	0.56	+0.1
1,035,322	+		CCNA_00957	0.57	-2.0
1,035,358	+				+0.5
1,035,364	+		CCNA_00957	0.60	-0.6
1,035,406	-		CCNA_00957	0.63	-0.9
1,035,426	-				+1.3
1,035,462	-		CCNA_00957	0.66	-1.5
1,035,464	-		CCNA_00957	0.67	+0.5
1,035,495	-		CCNA_00957	0.69	-0.1
1,035,523	+		CCNA_00957	0.71	-0.3
1,035,534	+		CCNA_00957	0.71	-1.5
1,035,564	+		CCNA_00957	0.73	+0.2
1,035,564	+		CCNA_00957	0.73	-0.7
1,035,572	-		CCNA_00957	0.74	-0.8
1,035,572	-		CCNA_00957	0.74	-1.2
1,035,614	-		CCNA_00957	0.77	-1.9
1,035,625	+		CCNA_00957	0.77	-1.8
1,035,692	+		CCNA_00957	0.82	-0.3
1,035,692	+		CCNA_00957	0.82	-1.3
1,035,700	-		CCNA_00957	0.82	-1.8
1,035,724	+		CCNA_00957	0.84	+0.1
1,035,760	+		CCNA_00957	0.87	-0.2
1,035,768	-		CCNA_00957	0.87	+0.7
1,035,806	-		CCNA_00957	0.90	+1.4
1,035,920	+				+0.9
1,035,945	+				+0.5
1,035,945	+				+1.2
1,035,989	+				+0.4
1,035,989	+				-0.5
1,035,989	+				-0.8
1,035,989	+				-1.0
1,035,989	+				-0.1
1,035,989	+				-0.9
1,035,989	+				-1.0
1,035,997	-				+0.7
1,035,997	-				-1.5
1,035,997	-				-0.3
1,035,997	-				-0.4
1,036,005	+				+0.1
1,036,015	+				+2.4
1,036,083	-				-0.3
1,036,239	+		CCNA_00958	0.21	-0.8
1,036,253	+		CCNA_00958	0.22	-0.8
1,036,254	+		CCNA_00958	0.23	-1.4
1,036,315	+		CCNA_00958	0.27	+1.6
1,036,316	-		CCNA_00958	0.27	-0.8
1,036,317	-		CCNA_00958	0.27	+0.5
1,036,323	-		CCNA_00958	0.28	+0.5
1,036,328	-		CCNA_00958	0.28	+1.4
1,036,328	-		CCNA_00958	0.28	+2.7
1,036,333	-		CCNA_00958	0.28	+1.4
1,036,381	+		CCNA_00958	0.32	-1.4
1,036,395	+		CCNA_00958	0.33	-0.2
1,036,435	+		CCNA_00958	0.36	+0.6
1,036,436	+		CCNA_00958	0.36	-0.9
1,036,443	-		CCNA_00958	0.37	+0.5
1,036,444	-		CCNA_00958	0.37	-0.3
1,036,444	-		CCNA_00958	0.37	-1.6
1,036,483	+		CCNA_00958	0.40	+0.3
1,036,483	+		CCNA_00958	0.40	-0.8
1,036,483	+		CCNA_00958	0.40	-0.9
1,036,483	+		CCNA_00958	0.40	-1.5
1,036,489	-		CCNA_00958	0.40	-0.3
1,036,491	-		CCNA_00958	0.40	+0.1
1,036,491	-		CCNA_00958	0.40	-0.8
1,036,491	-		CCNA_00958	0.40	-0.1
1,036,491	-		CCNA_00958	0.40	+0.7
1,036,491	-		CCNA_00958	0.40	-0.3
1,036,491	-		CCNA_00958	0.40	+0.6
1,036,491	-		CCNA_00958	0.40	-0.8
1,036,491	-		CCNA_00958	0.40	+0.2
1,036,491	-		CCNA_00958	0.40	-1.8
1,036,491	-		CCNA_00958	0.40	+2.5
1,036,491	-		CCNA_00958	0.40	+1.0
1,036,538	+		CCNA_00958	0.44	+1.7
1,036,609	+		CCNA_00958	0.49	-2.0
1,036,626	+		CCNA_00958	0.51	-0.8
1,036,639	+		CCNA_00958	0.52	+0.4
1,036,671	+		CCNA_00958	0.54	-2.2
1,036,679	-		CCNA_00958	0.55	-2.6
1,036,679	-		CCNA_00958	0.55	-0.9
1,036,681	-		CCNA_00958	0.55	+0.4
1,036,719	-		CCNA_00958	0.58	+0.4
1,036,772	-		CCNA_00958	0.62	-2.1
1,036,781	+		CCNA_00958	0.62	+0.3
1,036,786	+		CCNA_00958	0.63	+1.0
1,036,789	-		CCNA_00958	0.63	-1.1
1,036,793	+		CCNA_00958	0.63	-2.9
1,036,793	+		CCNA_00958	0.63	-1.7
1,036,796	-		CCNA_00958	0.63	-0.1
1,036,811	-		CCNA_00958	0.65	-0.7
1,036,882	+		CCNA_00958	0.70	-1.2
1,036,888	+		CCNA_00958	0.70	+0.5
1,036,891	-		CCNA_00958	0.71	+0.5
1,036,904	+		CCNA_00958	0.72	-1.7
1,036,908	-		CCNA_00958	0.72	+1.8
1,036,912	-		CCNA_00958	0.72	+0.5