Experiment: PYE with Tetracycline 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00873 and CCNA_00874 overlap by 2 nucleotides CCNA_00874 and CCNA_00875 are separated by 6 nucleotides CCNA_00875 and CCNA_00876 overlap by 22 nucleotides CCNA_00876 and CCNA_00877 are separated by 31 nucleotides
CCNA_00873: CCNA_00873 - amidophosphoribosyltransferase family protein, at 952,037 to 952,834
_00873
CCNA_00874: CCNA_00874 - biotin synthesis protein bioC, at 952,833 to 953,744
_00874
CCNA_00875: CCNA_00875 - Flp/Fap pilin component protein, at 953,751 to 953,924
_00875
CCNA_00876: CCNA_00876 - 7,8-dihydro-8-oxoguanine-triphosphatase, at 953,903 to 954,307
_00876
CCNA_00877: CCNA_00877 - hypothetical protein, at 954,339 to 954,947
_00877
Position (kb) 953
954 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 952.770 kb on + strand at 952.777 kb on - strand at 952.782 kb on - strand at 952.822 kb on + strand at 952.830 kb on - strand at 953.632 kb on + strand, within CCNA_00874 at 953.687 kb on - strand at 953.687 kb on - strand at 953.707 kb on + strand at 953.747 kb on + strand at 953.823 kb on + strand, within CCNA_00875 at 953.823 kb on + strand, within CCNA_00875 at 953.831 kb on - strand, within CCNA_00875 at 953.831 kb on - strand, within CCNA_00875 at 953.833 kb on + strand, within CCNA_00875 at 953.833 kb on + strand, within CCNA_00875 at 953.838 kb on + strand, within CCNA_00875 at 953.838 kb on + strand, within CCNA_00875 at 953.841 kb on - strand, within CCNA_00875 at 953.841 kb on - strand, within CCNA_00875 at 953.846 kb on - strand, within CCNA_00875 at 953.875 kb on + strand, within CCNA_00875 at 953.904 kb on - strand at 953.966 kb on - strand, within CCNA_00876 at 953.984 kb on - strand, within CCNA_00876 at 954.021 kb on - strand, within CCNA_00876 at 954.097 kb on + strand, within CCNA_00876 at 954.102 kb on + strand, within CCNA_00876 at 954.105 kb on - strand, within CCNA_00876 at 954.206 kb on - strand, within CCNA_00876 at 954.242 kb on + strand, within CCNA_00876 at 954.266 kb on + strand, within CCNA_00876 at 954.279 kb on - strand at 954.302 kb on + strand at 954.304 kb on - strand at 954.304 kb on - strand at 954.335 kb on - strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.362 kb on + strand at 954.365 kb on - strand at 954.367 kb on + strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.447 kb on - strand, within CCNA_00877 at 954.447 kb on - strand, within CCNA_00877 at 954.497 kb on + strand, within CCNA_00877 at 954.580 kb on + strand, within CCNA_00877 at 954.580 kb on + strand, within CCNA_00877 at 954.580 kb on + strand, within CCNA_00877 at 954.588 kb on - strand, within CCNA_00877 at 954.594 kb on - strand, within CCNA_00877 at 954.609 kb on - strand, within CCNA_00877 at 954.663 kb on - strand, within CCNA_00877 at 954.690 kb on - strand, within CCNA_00877 at 954.695 kb on - strand, within CCNA_00877 at 954.698 kb on - strand, within CCNA_00877 at 954.698 kb on - strand, within CCNA_00877 at 954.698 kb on - strand, within CCNA_00877 at 954.705 kb on - strand, within CCNA_00877 at 954.707 kb on + strand, within CCNA_00877 at 954.708 kb on - strand, within CCNA_00877 at 954.715 kb on + strand, within CCNA_00877 at 954.715 kb on + strand, within CCNA_00877 at 954.715 kb on + strand, within CCNA_00877 at 954.715 kb on + strand, within CCNA_00877 at 954.723 kb on - strand, within CCNA_00877 at 954.736 kb on + strand, within CCNA_00877 at 954.744 kb on - strand, within CCNA_00877 at 954.744 kb on - strand, within CCNA_00877 at 954.798 kb on + strand, within CCNA_00877 at 954.809 kb on + strand at 954.817 kb on - strand, within CCNA_00877 at 954.862 kb on + strand, within CCNA_00877 at 954.867 kb on + strand, within CCNA_00877 at 954.870 kb on - strand, within CCNA_00877 at 954.870 kb on - strand, within CCNA_00877 at 954.870 kb on - strand, within CCNA_00877 at 954.893 kb on + strand at 954.901 kb on - strand at 954.901 kb on - strand at 954.901 kb on - strand at 954.906 kb on - strand at 954.911 kb on + strand at 954.919 kb on - strand at 954.919 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.00005 mg/ml remove 952,770 + -1.0 952,777 - -0.2 952,782 - -0.8 952,822 + +0.0 952,830 - -0.4 953,632 + CCNA_00874 0.88 +0.5 953,687 - +0.3 953,687 - +1.2 953,707 + +0.2 953,747 + +0.3 953,823 + CCNA_00875 0.41 -1.1 953,823 + CCNA_00875 0.41 -3.4 953,831 - CCNA_00875 0.46 -0.5 953,831 - CCNA_00875 0.46 -0.8 953,833 + CCNA_00875 0.47 -0.5 953,833 + CCNA_00875 0.47 -0.5 953,838 + CCNA_00875 0.50 -1.3 953,838 + CCNA_00875 0.50 +0.9 953,841 - CCNA_00875 0.52 -0.4 953,841 - CCNA_00875 0.52 -0.5 953,846 - CCNA_00875 0.55 -1.0 953,875 + CCNA_00875 0.71 -1.1 953,904 - +1.1 953,966 - CCNA_00876 0.16 +0.0 953,984 - CCNA_00876 0.20 +1.1 954,021 - CCNA_00876 0.29 +1.2 954,097 + CCNA_00876 0.48 -1.0 954,102 + CCNA_00876 0.49 -0.2 954,105 - CCNA_00876 0.50 -0.4 954,206 - CCNA_00876 0.75 -0.4 954,242 + CCNA_00876 0.84 +0.2 954,266 + CCNA_00876 0.90 -1.3 954,279 - +0.1 954,302 + +0.6 954,304 - +0.9 954,304 - -1.0 954,335 - +1.5 954,337 + +0.8 954,337 + +0.1 954,337 + -1.1 954,337 + -2.8 954,337 + -0.5 954,337 + -0.1 954,337 + -1.1 954,337 + -0.5 954,345 - +2.2 954,345 - -0.5 954,345 - -0.9 954,345 - +0.5 954,345 - -1.1 954,345 - +1.3 954,345 - -0.2 954,362 + +1.3 954,365 - +0.1 954,367 + -0.5 954,370 - -0.7 954,370 - -2.1 954,370 - +1.2 954,370 - +0.7 954,370 - -0.2 954,447 - CCNA_00877 0.18 -1.2 954,447 - CCNA_00877 0.18 -2.4 954,497 + CCNA_00877 0.26 -2.3 954,580 + CCNA_00877 0.40 -0.9 954,580 + CCNA_00877 0.40 -1.6 954,580 + CCNA_00877 0.40 -2.1 954,588 - CCNA_00877 0.41 -0.9 954,594 - CCNA_00877 0.42 -0.2 954,609 - CCNA_00877 0.44 -0.1 954,663 - CCNA_00877 0.53 -2.1 954,690 - CCNA_00877 0.58 -1.1 954,695 - CCNA_00877 0.58 +0.9 954,698 - CCNA_00877 0.59 -0.4 954,698 - CCNA_00877 0.59 -0.2 954,698 - CCNA_00877 0.59 -0.4 954,705 - CCNA_00877 0.60 -0.2 954,707 + CCNA_00877 0.60 -0.1 954,708 - CCNA_00877 0.61 +0.1 954,715 + CCNA_00877 0.62 -1.7 954,715 + CCNA_00877 0.62 -1.7 954,715 + CCNA_00877 0.62 -1.4 954,715 + CCNA_00877 0.62 -2.9 954,723 - CCNA_00877 0.63 -0.2 954,736 + CCNA_00877 0.65 -1.1 954,744 - CCNA_00877 0.67 +0.6 954,744 - CCNA_00877 0.67 +0.5 954,798 + CCNA_00877 0.75 -1.0 954,809 + +2.9 954,817 - CCNA_00877 0.78 -0.3 954,862 + CCNA_00877 0.86 -1.3 954,867 + CCNA_00877 0.87 -2.0 954,870 - CCNA_00877 0.87 +0.5 954,870 - CCNA_00877 0.87 +1.3 954,870 - CCNA_00877 0.87 +1.4 954,893 + -0.3 954,901 - -2.5 954,901 - +0.4 954,901 - +0.3 954,906 - -0.9 954,911 + +0.3 954,919 - +1.0 954,919 - +2.5
Or see this region's nucleotide sequence