Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00774

Experiment: PYE with Tetracycline 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00773 and CCNA_03937 are separated by 168 nucleotidesCCNA_03937 and CCNA_00774 are separated by 26 nucleotidesCCNA_00774 and CCNA_00775 are separated by 9 nucleotides CCNA_00773: CCNA_00773 - carboxypeptidase S, at 827,458 to 828,936 _00773 CCNA_03937: CCNA_03937 - hypothetical protein, at 829,105 to 829,290 _03937 CCNA_00774: CCNA_00774 - ring hydroxylating diooxygenase, at 829,317 to 830,426 _00774 CCNA_00775: CCNA_00775 - aspartate aminotransferase, at 830,436 to 831,593 _00775 Position (kb) 829 830 831Strain fitness (log2 ratio) -2 -1 0 1 2 3at 828.323 kb on + strand, within CCNA_00773at 828.332 kb on - strand, within CCNA_00773at 828.354 kb on + strand, within CCNA_00773at 828.372 kb on - strand, within CCNA_00773at 828.382 kb on + strand, within CCNA_00773at 828.405 kb on - strand, within CCNA_00773at 828.409 kb on - strand, within CCNA_00773at 828.411 kb on + strand, within CCNA_00773at 828.419 kb on - strand, within CCNA_00773at 828.432 kb on + strand, within CCNA_00773at 828.434 kb on - strand, within CCNA_00773at 828.440 kb on - strand, within CCNA_00773at 828.463 kb on + strand, within CCNA_00773at 828.466 kb on - strand, within CCNA_00773at 828.468 kb on + strand, within CCNA_00773at 828.471 kb on - strand, within CCNA_00773at 828.474 kb on - strand, within CCNA_00773at 828.490 kb on + strand, within CCNA_00773at 828.500 kb on - strand, within CCNA_00773at 828.516 kb on + strand, within CCNA_00773at 828.580 kb on - strand, within CCNA_00773at 828.588 kb on + strand, within CCNA_00773at 828.590 kb on - strand, within CCNA_00773at 828.594 kb on + strand, within CCNA_00773at 828.602 kb on - strand, within CCNA_00773at 828.602 kb on - strand, within CCNA_00773at 828.602 kb on - strand, within CCNA_00773at 828.668 kb on + strand, within CCNA_00773at 828.689 kb on + strand, within CCNA_00773at 828.694 kb on + strand, within CCNA_00773at 828.702 kb on - strand, within CCNA_00773at 828.737 kb on + strand, within CCNA_00773at 828.744 kb on + strand, within CCNA_00773at 828.785 kb on - strand, within CCNA_00773at 828.833 kb on + strandat 828.833 kb on + strandat 828.851 kb on + strandat 828.851 kb on + strandat 828.864 kb on + strandat 828.896 kb on + strandat 828.904 kb on - strandat 828.904 kb on - strandat 828.920 kb on - strandat 828.931 kb on + strandat 828.939 kb on - strandat 829.001 kb on + strandat 829.001 kb on + strandat 829.001 kb on + strandat 829.009 kb on + strandat 829.009 kb on - strandat 829.009 kb on - strandat 829.009 kb on - strandat 829.017 kb on - strandat 829.022 kb on - strandat 829.061 kb on - strandat 829.126 kb on - strand, within CCNA_03937at 829.161 kb on + strand, within CCNA_03937at 829.162 kb on + strand, within CCNA_03937at 829.162 kb on + strand, within CCNA_03937at 829.170 kb on - strand, within CCNA_03937at 829.209 kb on + strand, within CCNA_03937at 829.217 kb on - strand, within CCNA_03937at 829.217 kb on - strand, within CCNA_03937at 829.217 kb on - strand, within CCNA_03937at 829.219 kb on - strand, within CCNA_03937at 829.229 kb on + strand, within CCNA_03937at 829.257 kb on + strand, within CCNA_03937at 829.344 kb on - strandat 829.344 kb on - strandat 829.354 kb on - strandat 829.463 kb on - strand, within CCNA_00774at 829.473 kb on + strand, within CCNA_00774at 829.473 kb on + strand, within CCNA_00774at 829.481 kb on - strand, within CCNA_00774at 829.481 kb on - strand, within CCNA_00774at 829.481 kb on - strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.502 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.525 kb on - strand, within CCNA_00774at 829.547 kb on - strand, within CCNA_00774at 829.569 kb on + strand, within CCNA_00774at 829.593 kb on - strand, within CCNA_00774at 829.623 kb on + strand, within CCNA_00774at 829.631 kb on - strand, within CCNA_00774at 829.675 kb on + strand, within CCNA_00774at 829.683 kb on + strand, within CCNA_00774at 829.683 kb on - strand, within CCNA_00774at 829.707 kb on + strand, within CCNA_00774at 829.707 kb on + strand, within CCNA_00774at 829.725 kb on + strand, within CCNA_00774at 829.725 kb on + strand, within CCNA_00774at 829.741 kb on + strand, within CCNA_00774at 829.795 kb on - strand, within CCNA_00774at 829.811 kb on + strand, within CCNA_00774at 829.811 kb on + strand, within CCNA_00774at 829.819 kb on - strand, within CCNA_00774at 829.819 kb on - strand, within CCNA_00774at 829.835 kb on - strand, within CCNA_00774at 829.840 kb on - strand, within CCNA_00774at 829.860 kb on + strand, within CCNA_00774at 829.860 kb on + strand, within CCNA_00774at 829.869 kb on - strand, within CCNA_00774at 829.888 kb on + strand, within CCNA_00774at 829.888 kb on + strand, within CCNA_00774at 829.896 kb on - strand, within CCNA_00774at 829.899 kb on + strand, within CCNA_00774at 829.907 kb on - strand, within CCNA_00774at 830.006 kb on + strand, within CCNA_00774at 830.012 kb on + strand, within CCNA_00774at 830.012 kb on + strand, within CCNA_00774at 830.017 kb on + strand, within CCNA_00774at 830.020 kb on - strand, within CCNA_00774at 830.020 kb on - strand, within CCNA_00774at 830.062 kb on + strand, within CCNA_00774at 830.070 kb on - strand, within CCNA_00774at 830.083 kb on + strand, within CCNA_00774at 830.170 kb on + strand, within CCNA_00774at 830.251 kb on - strand, within CCNA_00774at 830.259 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774at 830.297 kb on - strand, within CCNA_00774at 830.297 kb on - strand, within CCNA_00774at 830.316 kb on - strandat 830.337 kb on - strandat 830.337 kb on - strandat 830.416 kb on + strandat 830.420 kb on + strandat 830.444 kb on - strandat 830.473 kb on + strandat 830.486 kb on - strandat 830.508 kb on - strandat 830.531 kb on - strandat 830.601 kb on + strand, within CCNA_00775at 830.608 kb on - strand, within CCNA_00775at 830.610 kb on + strandat 830.610 kb on + strand, within CCNA_00775at 830.636 kb on + strand, within CCNA_00775at 830.675 kb on - strand, within CCNA_00775at 830.691 kb on + strand, within CCNA_00775at 830.709 kb on - strand, within CCNA_00775at 830.760 kb on + strand, within CCNA_00775at 830.771 kb on - strand, within CCNA_00775at 830.773 kb on + strand, within CCNA_00775at 830.781 kb on - strand, within CCNA_00775at 830.797 kb on - strand, within CCNA_00775at 830.814 kb on + strand, within CCNA_00775at 830.822 kb on - strand, within CCNA_00775at 830.823 kb on - strand, within CCNA_00775at 830.823 kb on - strand, within CCNA_00775at 830.847 kb on + strand, within CCNA_00775at 830.847 kb on + strand, within CCNA_00775at 830.847 kb on + strand, within CCNA_00775at 830.850 kb on - strand, within CCNA_00775at 830.855 kb on - strandat 830.855 kb on - strand, within CCNA_00775at 830.861 kb on - strand, within CCNA_00775at 830.887 kb on - strand, within CCNA_00775at 830.903 kb on - strand, within CCNA_00775at 830.919 kb on + strand, within CCNA_00775at 830.950 kb on - strand, within CCNA_00775at 830.952 kb on + strand, within CCNA_00775at 830.960 kb on - strandat 830.995 kb on + strand, within CCNA_00775at 831.096 kb on - strand, within CCNA_00775at 831.102 kb on + strand, within CCNA_00775at 831.110 kb on - strand, within CCNA_00775at 831.110 kb on - strand, within CCNA_00775at 831.110 kb on - strand, within CCNA_00775at 831.124 kb on + strand, within CCNA_00775at 831.181 kb on + strand, within CCNA_00775at 831.191 kb on + strand, within CCNA_00775at 831.228 kb on - strand, within CCNA_00775at 831.240 kb on - strand, within CCNA_00775at 831.244 kb on + strand, within CCNA_00775at 831.249 kb on + strand, within CCNA_00775at 831.252 kb on - strand, within CCNA_00775at 831.252 kb on - strand, within CCNA_00775at 831.314 kb on + strand, within CCNA_00775at 831.337 kb on + strand, within CCNA_00775at 831.345 kb on + strand, within CCNA_00775at 831.356 kb on + strand, within CCNA_00775at 831.356 kb on + strand, within CCNA_00775at 831.364 kb on - strand, within CCNA_00775at 831.364 kb on - strand, within CCNA_00775at 831.371 kb on + strand, within CCNA_00775at 831.398 kb on + strand, within CCNA_00775at 831.398 kb on + strand, within CCNA_00775at 831.398 kb on + strand, within CCNA_00775at 831.398 kb on + strand, within CCNA_00775at 831.406 kb on - strand, within CCNA_00775at 831.411 kb on - strand, within CCNA_00775

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.00005 mg/ml
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828,323 + CCNA_00773 0.58 +0.8
828,332 - CCNA_00773 0.59 -0.1
828,354 + CCNA_00773 0.61 -2.1
828,372 - CCNA_00773 0.62 -0.7
828,382 + CCNA_00773 0.62 -0.5
828,405 - CCNA_00773 0.64 -0.0
828,409 - CCNA_00773 0.64 +0.6
828,411 + CCNA_00773 0.64 +0.4
828,419 - CCNA_00773 0.65 +1.0
828,432 + CCNA_00773 0.66 +0.4
828,434 - CCNA_00773 0.66 -0.6
828,440 - CCNA_00773 0.66 +0.6
828,463 + CCNA_00773 0.68 -1.8
828,466 - CCNA_00773 0.68 +0.2
828,468 + CCNA_00773 0.68 -0.3
828,471 - CCNA_00773 0.68 -0.2
828,474 - CCNA_00773 0.69 -0.1
828,490 + CCNA_00773 0.70 +0.3
828,500 - CCNA_00773 0.70 +0.4
828,516 + CCNA_00773 0.72 -0.3
828,580 - CCNA_00773 0.76 -1.2
828,588 + CCNA_00773 0.76 +0.5
828,590 - CCNA_00773 0.77 -0.6
828,594 + CCNA_00773 0.77 +1.4
828,602 - CCNA_00773 0.77 +0.1
828,602 - CCNA_00773 0.77 -1.1
828,602 - CCNA_00773 0.77 +0.5
828,668 + CCNA_00773 0.82 +1.0
828,689 + CCNA_00773 0.83 -1.1
828,694 + CCNA_00773 0.84 +0.1
828,702 - CCNA_00773 0.84 -1.5
828,737 + CCNA_00773 0.86 +0.5
828,744 + CCNA_00773 0.87 +1.5
828,785 - CCNA_00773 0.90 -0.1
828,833 + +1.7
828,833 + +1.6
828,851 + -0.0
828,851 + -0.0
828,864 + +3.4
828,896 + +2.5
828,904 - -1.3
828,904 - +0.2
828,920 - -0.8
828,931 + +0.5
828,939 - +0.1
829,001 + +1.4
829,001 + +0.1
829,001 + +2.7
829,009 + +1.0
829,009 - +0.0
829,009 - -1.4
829,009 - +0.5
829,017 - -0.7
829,022 - +0.6
829,061 - +0.3
829,126 - CCNA_03937 0.11 -1.0
829,161 + CCNA_03937 0.30 -0.5
829,162 + CCNA_03937 0.31 -0.1
829,162 + CCNA_03937 0.31 -1.9
829,170 - CCNA_03937 0.35 -1.2
829,209 + CCNA_03937 0.56 -0.5
829,217 - CCNA_03937 0.60 +0.5
829,217 - CCNA_03937 0.60 +0.4
829,217 - CCNA_03937 0.60 -0.6
829,219 - CCNA_03937 0.61 +0.5
829,229 + CCNA_03937 0.67 -0.7
829,257 + CCNA_03937 0.82 -1.8
829,344 - +1.1
829,344 - -0.5
829,354 - +0.5
829,463 - CCNA_00774 0.13 -0.1
829,473 + CCNA_00774 0.14 +0.1
829,473 + CCNA_00774 0.14 +1.7
829,481 - CCNA_00774 0.15 +0.8
829,481 - CCNA_00774 0.15 +0.4
829,481 - CCNA_00774 0.15 -0.5
829,494 + CCNA_00774 0.16 +0.5
829,494 + CCNA_00774 0.16 +0.6
829,494 + CCNA_00774 0.16 -0.3
829,494 + CCNA_00774 0.16 +0.3
829,494 + CCNA_00774 0.16 -0.8
829,499 + CCNA_00774 0.16 +0.4
829,499 + CCNA_00774 0.16 -0.6
829,499 + CCNA_00774 0.16 +0.6
829,499 + CCNA_00774 0.16 -1.1
829,499 + CCNA_00774 0.16 -0.6
829,499 + CCNA_00774 0.16 -0.7
829,499 + CCNA_00774 0.16 +1.1
829,499 + CCNA_00774 0.16 -0.9
829,502 - CCNA_00774 0.17 +1.4
829,507 - CCNA_00774 0.17 +1.0
829,507 - CCNA_00774 0.17 -0.7
829,525 - CCNA_00774 0.19 +0.7
829,547 - CCNA_00774 0.21 -0.6
829,569 + CCNA_00774 0.23 -0.7
829,593 - CCNA_00774 0.25 +0.6
829,623 + CCNA_00774 0.28 -0.3
829,631 - CCNA_00774 0.28 -0.1
829,675 + CCNA_00774 0.32 -0.7
829,683 + CCNA_00774 0.33 +0.0
829,683 - CCNA_00774 0.33 +0.5
829,707 + CCNA_00774 0.35 +0.2
829,707 + CCNA_00774 0.35 -0.7
829,725 + CCNA_00774 0.37 +0.5
829,725 + CCNA_00774 0.37 +1.0
829,741 + CCNA_00774 0.38 +0.2
829,795 - CCNA_00774 0.43 -0.6
829,811 + CCNA_00774 0.45 +0.1
829,811 + CCNA_00774 0.45 -0.8
829,819 - CCNA_00774 0.45 +1.2
829,819 - CCNA_00774 0.45 -1.3
829,835 - CCNA_00774 0.47 -0.7
829,840 - CCNA_00774 0.47 -0.1
829,860 + CCNA_00774 0.49 -0.7
829,860 + CCNA_00774 0.49 +1.4
829,869 - CCNA_00774 0.50 -1.0
829,888 + CCNA_00774 0.51 -1.5
829,888 + CCNA_00774 0.51 -1.1
829,896 - CCNA_00774 0.52 -0.8
829,899 + CCNA_00774 0.52 +0.1
829,907 - CCNA_00774 0.53 +0.8
830,006 + CCNA_00774 0.62 +0.1
830,012 + CCNA_00774 0.63 -0.4
830,012 + CCNA_00774 0.63 -1.9
830,017 + CCNA_00774 0.63 -0.6
830,020 - CCNA_00774 0.63 +1.4
830,020 - CCNA_00774 0.63 -1.0
830,062 + CCNA_00774 0.67 -1.5
830,070 - CCNA_00774 0.68 -0.1
830,083 + CCNA_00774 0.69 -0.2
830,170 + CCNA_00774 0.77 -1.6
830,251 - CCNA_00774 0.84 +0.5
830,259 + CCNA_00774 0.85 +0.1
830,289 + CCNA_00774 0.88 -0.9
830,289 + CCNA_00774 0.88 +0.1
830,289 + CCNA_00774 0.88 -2.0
830,289 + CCNA_00774 0.88 -1.0
830,297 - CCNA_00774 0.88 -0.3
830,297 - CCNA_00774 0.88 +0.8
830,316 - +0.4
830,337 - +2.4
830,337 - +1.9
830,416 + -0.6
830,420 + -0.5
830,444 - +0.2
830,473 + -0.4
830,486 - +0.5
830,508 - -0.5
830,531 - +0.6
830,601 + CCNA_00775 0.14 +1.3
830,608 - CCNA_00775 0.15 +2.0
830,610 + +0.5
830,610 + CCNA_00775 0.15 -0.7
830,636 + CCNA_00775 0.17 +0.8
830,675 - CCNA_00775 0.21 +0.3
830,691 + CCNA_00775 0.22 +2.1
830,709 - CCNA_00775 0.24 -0.9
830,760 + CCNA_00775 0.28 +0.4
830,771 - CCNA_00775 0.29 +1.6
830,773 + CCNA_00775 0.29 +0.5
830,781 - CCNA_00775 0.30 +1.2
830,797 - CCNA_00775 0.31 -1.7
830,814 + CCNA_00775 0.33 -0.4
830,822 - CCNA_00775 0.33 +0.9
830,823 - CCNA_00775 0.33 +1.4
830,823 - CCNA_00775 0.33 +0.0
830,847 + CCNA_00775 0.35 -0.5
830,847 + CCNA_00775 0.35 +0.8
830,847 + CCNA_00775 0.35 +1.5
830,850 - CCNA_00775 0.36 +0.8
830,855 - +1.3
830,855 - CCNA_00775 0.36 +1.5
830,861 - CCNA_00775 0.37 +0.6
830,887 - CCNA_00775 0.39 +0.8
830,903 - CCNA_00775 0.40 +0.2
830,919 + CCNA_00775 0.42 -0.2
830,950 - CCNA_00775 0.44 +0.7
830,952 + CCNA_00775 0.45 +0.2
830,960 - +2.4
830,995 + CCNA_00775 0.48 +0.9
831,096 - CCNA_00775 0.57 +0.7
831,102 + CCNA_00775 0.58 -0.6
831,110 - CCNA_00775 0.58 +0.2
831,110 - CCNA_00775 0.58 +0.2
831,110 - CCNA_00775 0.58 +0.4
831,124 + CCNA_00775 0.59 +0.3
831,181 + CCNA_00775 0.64 +0.8
831,191 + CCNA_00775 0.65 +2.0
831,228 - CCNA_00775 0.68 +1.0
831,240 - CCNA_00775 0.69 +1.1
831,244 + CCNA_00775 0.70 -2.0
831,249 + CCNA_00775 0.70 -0.5
831,252 - CCNA_00775 0.70 +0.0
831,252 - CCNA_00775 0.70 +0.8
831,314 + CCNA_00775 0.76 +2.5
831,337 + CCNA_00775 0.78 -0.7
831,345 + CCNA_00775 0.78 +0.1
831,356 + CCNA_00775 0.79 +0.5
831,356 + CCNA_00775 0.79 -0.5
831,364 - CCNA_00775 0.80 +1.5
831,364 - CCNA_00775 0.80 +0.8
831,371 + CCNA_00775 0.81 -0.6
831,398 + CCNA_00775 0.83 +0.1
831,398 + CCNA_00775 0.83 -0.9
831,398 + CCNA_00775 0.83 -0.6
831,398 + CCNA_00775 0.83 +0.3
831,406 - CCNA_00775 0.84 -0.9
831,411 - CCNA_00775 0.84 -1.0

Or see this region's nucleotide sequence