Experiment: PYE with Tetracycline 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00680 and CCNA_00681 overlap by 4 nucleotides CCNA_00681 and CCNA_00682 are separated by 94 nucleotides CCNA_00682 and CCNA_00683 are separated by 396 nucleotides
CCNA_00680: CCNA_00680 - 2-hydroxychromene-2-carboxylate isomerase, at 736,612 to 737,247
_00680
CCNA_00681: CCNA_00681 - short chain dehydrogenase, at 737,244 to 737,981
_00681
CCNA_00682: CCNA_00682 - MarR-family transcriptional regulator, at 738,076 to 738,534
_00682
CCNA_00683: CCNA_00683 - Deoxyribodipyrimidine photo-lyase-related protein, at 738,931 to 740,460
_00683
Position (kb) 738
739 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 737.078 kb on + strand, within CCNA_00680 at 737.078 kb on + strand, within CCNA_00680 at 737.126 kb on - strand, within CCNA_00680 at 737.133 kb on - strand, within CCNA_00680 at 737.171 kb on + strand, within CCNA_00680 at 737.232 kb on + strand at 737.250 kb on - strand at 737.258 kb on - strand at 737.260 kb on - strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.278 kb on - strand at 737.297 kb on - strand at 737.317 kb on + strand at 737.341 kb on + strand, within CCNA_00681 at 737.348 kb on + strand, within CCNA_00681 at 737.360 kb on + strand, within CCNA_00681 at 737.397 kb on + strand, within CCNA_00681 at 737.397 kb on + strand, within CCNA_00681 at 737.397 kb on + strand, within CCNA_00681 at 737.405 kb on - strand, within CCNA_00681 at 737.405 kb on - strand, within CCNA_00681 at 737.405 kb on - strand, within CCNA_00681 at 737.405 kb on - strand at 737.405 kb on - strand, within CCNA_00681 at 737.457 kb on - strand, within CCNA_00681 at 737.495 kb on + strand, within CCNA_00681 at 737.570 kb on - strand, within CCNA_00681 at 737.575 kb on - strand, within CCNA_00681 at 737.577 kb on - strand, within CCNA_00681 at 737.606 kb on + strand, within CCNA_00681 at 737.643 kb on + strand, within CCNA_00681 at 737.644 kb on + strand, within CCNA_00681 at 737.655 kb on + strand, within CCNA_00681 at 737.659 kb on - strand, within CCNA_00681 at 737.684 kb on + strand, within CCNA_00681 at 737.684 kb on + strand, within CCNA_00681 at 737.684 kb on + strand, within CCNA_00681 at 737.684 kb on + strand, within CCNA_00681 at 737.689 kb on + strand, within CCNA_00681 at 737.692 kb on - strand, within CCNA_00681 at 737.715 kb on - strand, within CCNA_00681 at 737.717 kb on - strand, within CCNA_00681 at 737.730 kb on - strand, within CCNA_00681 at 737.811 kb on + strand, within CCNA_00681 at 737.811 kb on + strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.854 kb on - strand, within CCNA_00681 at 737.888 kb on + strand, within CCNA_00681 at 737.888 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand at 737.895 kb on + strand, within CCNA_00681 at 737.896 kb on - strand, within CCNA_00681 at 737.896 kb on - strand, within CCNA_00681 at 737.896 kb on - strand, within CCNA_00681 at 737.896 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.903 kb on - strand, within CCNA_00681 at 737.910 kb on + strand at 737.910 kb on + strand at 737.918 kb on - strand at 737.918 kb on - strand at 737.919 kb on - strand at 737.919 kb on - strand at 737.959 kb on - strand at 737.959 kb on - strand at 737.959 kb on - strand at 738.073 kb on + strand at 738.091 kb on - strand at 738.093 kb on - strand at 738.102 kb on + strand at 738.110 kb on - strand at 738.110 kb on - strand at 738.196 kb on - strand, within CCNA_00682 at 738.196 kb on - strand, within CCNA_00682 at 738.196 kb on - strand, within CCNA_00682 at 738.236 kb on - strand, within CCNA_00682 at 738.255 kb on + strand, within CCNA_00682 at 738.259 kb on - strand, within CCNA_00682 at 738.268 kb on + strand, within CCNA_00682 at 738.299 kb on - strand, within CCNA_00682 at 738.299 kb on - strand, within CCNA_00682 at 738.311 kb on + strand, within CCNA_00682 at 738.311 kb on + strand, within CCNA_00682 at 738.311 kb on + strand, within CCNA_00682 at 738.322 kb on + strand, within CCNA_00682 at 738.332 kb on + strand, within CCNA_00682 at 738.340 kb on - strand, within CCNA_00682 at 738.345 kb on + strand, within CCNA_00682 at 738.351 kb on + strand, within CCNA_00682 at 738.351 kb on + strand, within CCNA_00682 at 738.377 kb on - strand, within CCNA_00682 at 738.377 kb on - strand, within CCNA_00682 at 738.412 kb on - strand, within CCNA_00682 at 738.414 kb on + strand, within CCNA_00682 at 738.441 kb on + strand, within CCNA_00682 at 738.449 kb on - strand, within CCNA_00682 at 738.451 kb on + strand, within CCNA_00682 at 738.451 kb on + strand, within CCNA_00682 at 738.451 kb on + strand, within CCNA_00682 at 738.451 kb on + strand, within CCNA_00682 at 738.459 kb on - strand, within CCNA_00682 at 738.459 kb on - strand, within CCNA_00682 at 738.464 kb on - strand, within CCNA_00682 at 738.467 kb on + strand, within CCNA_00682 at 738.469 kb on - strand, within CCNA_00682 at 738.475 kb on + strand, within CCNA_00682 at 738.488 kb on - strand, within CCNA_00682 at 738.496 kb on + strand at 738.513 kb on + strand at 738.519 kb on + strand at 738.539 kb on + strand at 738.563 kb on + strand at 738.588 kb on + strand at 738.593 kb on + strand at 738.594 kb on - strand at 738.606 kb on + strand at 738.614 kb on - strand at 738.614 kb on - strand at 738.614 kb on - strand at 738.614 kb on - strand at 738.614 kb on - strand at 738.617 kb on + strand at 738.617 kb on + strand at 738.622 kb on + strand at 738.622 kb on + strand at 738.630 kb on - strand at 738.635 kb on - strand at 738.640 kb on - strand at 738.640 kb on - strand at 738.653 kb on - strand at 738.660 kb on - strand at 738.660 kb on - strand at 738.677 kb on + strand at 738.677 kb on + strand at 738.685 kb on - strand at 738.685 kb on - strand at 738.685 kb on - strand at 738.700 kb on + strand at 738.700 kb on + strand at 738.740 kb on - strand at 738.740 kb on - strand at 738.762 kb on - strand at 738.766 kb on + strand at 738.809 kb on + strand at 738.814 kb on + strand at 738.817 kb on - strand at 738.817 kb on - strand at 738.819 kb on + strand at 738.819 kb on + strand at 738.819 kb on + strand at 738.822 kb on - strand at 738.822 kb on - strand at 738.824 kb on + strand at 738.824 kb on + strand at 738.824 kb on + strand at 738.827 kb on - strand at 738.832 kb on - strand at 738.837 kb on + strand at 738.842 kb on + strand at 738.844 kb on + strand at 738.844 kb on + strand at 738.844 kb on + strand at 738.844 kb on + strand at 738.844 kb on + strand at 738.844 kb on + strand at 738.844 kb on + strand at 738.845 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.846 kb on + strand at 738.852 kb on - strand at 738.852 kb on - strand at 738.852 kb on - strand at 738.854 kb on - strand at 738.854 kb on - strand at 738.854 kb on - strand at 738.854 kb on - strand at 738.877 kb on - strand at 738.877 kb on - strand at 738.877 kb on - strand at 738.900 kb on - strand at 738.919 kb on + strand at 738.924 kb on + strand at 738.927 kb on - strand at 738.936 kb on - strand at 738.962 kb on + strand at 738.962 kb on + strand at 738.962 kb on + strand at 738.962 kb on + strand at 738.962 kb on + strand at 738.970 kb on - strand at 738.970 kb on - strand at 738.970 kb on - strand at 738.970 kb on - strand at 738.970 kb on - strand at 738.970 kb on - strand at 738.970 kb on - strand at 738.979 kb on - strand at 739.008 kb on + strand at 739.008 kb on + strand at 739.008 kb on + strand at 739.008 kb on + strand at 739.016 kb on - strand at 739.016 kb on - strand at 739.016 kb on - strand at 739.016 kb on - strand at 739.077 kb on + strand at 739.077 kb on + strand at 739.085 kb on - strand, within CCNA_00683 at 739.088 kb on - strand, within CCNA_00683 at 739.092 kb on - strand, within CCNA_00683 at 739.138 kb on + strand, within CCNA_00683 at 739.197 kb on + strand, within CCNA_00683 at 739.263 kb on + strand, within CCNA_00683 at 739.271 kb on - strand, within CCNA_00683 at 739.272 kb on - strand, within CCNA_00683 at 739.305 kb on - strand, within CCNA_00683 at 739.316 kb on - strand, within CCNA_00683 at 739.316 kb on - strand, within CCNA_00683 at 739.327 kb on - strand, within CCNA_00683 at 739.330 kb on - strand, within CCNA_00683 at 739.354 kb on - strand, within CCNA_00683 at 739.358 kb on + strand, within CCNA_00683 at 739.363 kb on + strand, within CCNA_00683 at 739.379 kb on + strand, within CCNA_00683 at 739.381 kb on - strand, within CCNA_00683 at 739.381 kb on - strand, within CCNA_00683 at 739.384 kb on + strand, within CCNA_00683 at 739.384 kb on + strand, within CCNA_00683 at 739.392 kb on - strand, within CCNA_00683 at 739.415 kb on - strand, within CCNA_00683 at 739.417 kb on + strand, within CCNA_00683 at 739.425 kb on - strand, within CCNA_00683 at 739.436 kb on + strand, within CCNA_00683 at 739.454 kb on + strand, within CCNA_00683 at 739.454 kb on + strand, within CCNA_00683 at 739.454 kb on + strand, within CCNA_00683 at 739.456 kb on - strand, within CCNA_00683 at 739.462 kb on - strand, within CCNA_00683 at 739.462 kb on - strand, within CCNA_00683 at 739.462 kb on - strand, within CCNA_00683 at 739.467 kb on - strand, within CCNA_00683 at 739.475 kb on + strand, within CCNA_00683 at 739.475 kb on + strand, within CCNA_00683 at 739.483 kb on - strand, within CCNA_00683 at 739.483 kb on - strand, within CCNA_00683 at 739.500 kb on + strand, within CCNA_00683 at 739.508 kb on - strand, within CCNA_00683 at 739.508 kb on - strand, within CCNA_00683
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.00005 mg/ml remove 737,078 + CCNA_00680 0.73 -0.1 737,078 + CCNA_00680 0.73 -1.2 737,126 - CCNA_00680 0.81 -0.0 737,133 - CCNA_00680 0.82 -2.2 737,171 + CCNA_00680 0.88 +1.1 737,232 + -1.8 737,250 - -1.8 737,258 - -1.2 737,260 - +1.8 737,270 + -0.2 737,270 + +0.1 737,270 + +0.4 737,270 + -1.2 737,270 + -2.1 737,270 + +1.0 737,278 - -0.6 737,297 - -1.7 737,317 + -0.8 737,341 + CCNA_00681 0.13 -1.6 737,348 + CCNA_00681 0.14 +0.7 737,360 + CCNA_00681 0.16 +0.2 737,397 + CCNA_00681 0.21 +0.6 737,397 + CCNA_00681 0.21 -0.8 737,397 + CCNA_00681 0.21 -2.5 737,405 - CCNA_00681 0.22 -1.2 737,405 - CCNA_00681 0.22 -1.5 737,405 - CCNA_00681 0.22 -1.8 737,405 - +1.6 737,405 - CCNA_00681 0.22 -1.5 737,457 - CCNA_00681 0.29 +0.6 737,495 + CCNA_00681 0.34 -0.7 737,570 - CCNA_00681 0.44 +0.5 737,575 - CCNA_00681 0.45 +0.5 737,577 - CCNA_00681 0.45 -1.3 737,606 + CCNA_00681 0.49 +0.0 737,643 + CCNA_00681 0.54 +0.3 737,644 + CCNA_00681 0.54 -1.0 737,655 + CCNA_00681 0.56 -0.7 737,659 - CCNA_00681 0.56 -1.8 737,684 + CCNA_00681 0.60 +0.1 737,684 + CCNA_00681 0.60 -1.0 737,684 + CCNA_00681 0.60 -0.6 737,684 + CCNA_00681 0.60 -1.5 737,689 + CCNA_00681 0.60 -0.6 737,692 - CCNA_00681 0.61 +0.9 737,715 - CCNA_00681 0.64 -2.0 737,717 - CCNA_00681 0.64 +0.9 737,730 - CCNA_00681 0.66 -0.9 737,811 + CCNA_00681 0.77 +0.0 737,811 + CCNA_00681 0.77 +2.2 737,819 - CCNA_00681 0.78 -0.8 737,819 - CCNA_00681 0.78 +2.2 737,819 - CCNA_00681 0.78 +0.6 737,819 - CCNA_00681 0.78 -0.7 737,819 - CCNA_00681 0.78 +0.9 737,819 - CCNA_00681 0.78 -1.9 737,819 - CCNA_00681 0.78 +2.0 737,819 - CCNA_00681 0.78 -0.2 737,819 - CCNA_00681 0.78 -1.0 737,854 - CCNA_00681 0.83 +0.3 737,888 + CCNA_00681 0.87 -0.7 737,888 + CCNA_00681 0.87 -0.5 737,890 + CCNA_00681 0.88 -1.0 737,890 + CCNA_00681 0.88 -0.5 737,890 + CCNA_00681 0.88 +2.4 737,890 + CCNA_00681 0.88 +0.6 737,890 + CCNA_00681 0.88 -0.5 737,890 + CCNA_00681 0.88 -2.1 737,890 + CCNA_00681 0.88 -2.0 737,890 + CCNA_00681 0.88 -1.1 737,890 + +1.6 737,895 + CCNA_00681 0.88 -0.1 737,896 - CCNA_00681 0.88 -0.3 737,896 - CCNA_00681 0.88 -2.2 737,896 - CCNA_00681 0.88 +0.6 737,896 - CCNA_00681 0.88 -0.5 737,898 - CCNA_00681 0.89 -1.7 737,898 - CCNA_00681 0.89 -2.2 737,898 - CCNA_00681 0.89 -0.9 737,898 - CCNA_00681 0.89 +0.2 737,898 - CCNA_00681 0.89 -1.5 737,898 - CCNA_00681 0.89 +1.2 737,898 - CCNA_00681 0.89 -0.5 737,898 - CCNA_00681 0.89 +1.2 737,898 - CCNA_00681 0.89 +0.1 737,898 - CCNA_00681 0.89 -0.1 737,903 - CCNA_00681 0.89 -2.5 737,910 + -0.5 737,910 + -1.1 737,918 - -0.5 737,918 - +0.7 737,919 - -0.4 737,919 - -0.6 737,959 - -2.4 737,959 - -0.3 737,959 - +0.9 738,073 + -0.6 738,091 - -0.7 738,093 - -1.2 738,102 + +0.3 738,110 - -1.2 738,110 - +1.6 738,196 - CCNA_00682 0.26 -0.1 738,196 - CCNA_00682 0.26 -0.0 738,196 - CCNA_00682 0.26 +0.0 738,236 - CCNA_00682 0.35 -0.8 738,255 + CCNA_00682 0.39 +1.5 738,259 - CCNA_00682 0.40 -1.9 738,268 + CCNA_00682 0.42 +1.6 738,299 - CCNA_00682 0.49 -1.7 738,299 - CCNA_00682 0.49 +0.7 738,311 + CCNA_00682 0.51 +1.0 738,311 + CCNA_00682 0.51 +1.3 738,311 + CCNA_00682 0.51 +1.1 738,322 + CCNA_00682 0.54 +1.5 738,332 + CCNA_00682 0.56 +1.3 738,340 - CCNA_00682 0.58 -0.1 738,345 + CCNA_00682 0.59 +1.6 738,351 + CCNA_00682 0.60 +0.3 738,351 + CCNA_00682 0.60 +1.3 738,377 - CCNA_00682 0.66 +0.3 738,377 - CCNA_00682 0.66 -0.6 738,412 - CCNA_00682 0.73 -0.4 738,414 + CCNA_00682 0.74 +1.4 738,441 + CCNA_00682 0.80 +1.3 738,449 - CCNA_00682 0.81 -1.2 738,451 + CCNA_00682 0.82 +2.0 738,451 + CCNA_00682 0.82 +1.5 738,451 + CCNA_00682 0.82 +1.4 738,451 + CCNA_00682 0.82 +0.9 738,459 - CCNA_00682 0.83 -0.7 738,459 - CCNA_00682 0.83 +2.4 738,464 - CCNA_00682 0.85 -0.5 738,467 + CCNA_00682 0.85 +1.6 738,469 - CCNA_00682 0.86 -1.1 738,475 + CCNA_00682 0.87 +1.9 738,488 - CCNA_00682 0.90 +0.5 738,496 + +0.9 738,513 + +0.2 738,519 + -3.0 738,539 + -0.0 738,563 + -0.3 738,588 + +0.8 738,593 + +0.4 738,594 - -1.4 738,606 + -0.5 738,614 - +0.6 738,614 - -0.5 738,614 - +0.1 738,614 - +1.7 738,614 - +0.9 738,617 + -0.3 738,617 + +1.2 738,622 + -0.8 738,622 + +1.4 738,630 - +0.2 738,635 - -2.5 738,640 - +0.6 738,640 - +1.3 738,653 - +0.6 738,660 - -2.3 738,660 - -0.5 738,677 + +0.8 738,677 + +0.0 738,685 - -1.2 738,685 - +0.1 738,685 - +0.4 738,700 + +1.0 738,700 + -0.1 738,740 - +0.8 738,740 - -0.4 738,762 - -0.1 738,766 + -0.6 738,809 + +1.6 738,814 + +0.2 738,817 - +0.4 738,817 - -0.3 738,819 + -0.8 738,819 + -1.8 738,819 + +0.6 738,822 - +0.6 738,822 - -0.6 738,824 + +2.1 738,824 + +0.5 738,824 + +1.1 738,827 - -1.5 738,832 - +1.4 738,837 + -0.1 738,842 + +1.5 738,844 + +1.0 738,844 + +0.1 738,844 + -0.6 738,844 + +0.7 738,844 + +2.6 738,844 + +0.5 738,844 + -0.4 738,845 + -0.8 738,846 + -0.5 738,846 + -0.6 738,846 + +1.0 738,846 + +0.6 738,846 + +0.3 738,846 + -0.5 738,846 + -2.1 738,846 + -0.6 738,846 + +0.5 738,846 + +1.3 738,846 + +0.9 738,852 - +1.0 738,852 - +1.2 738,852 - +1.6 738,854 - +1.3 738,854 - +1.8 738,854 - +1.5 738,854 - +2.9 738,877 - +0.8 738,877 - -0.1 738,877 - +0.5 738,900 - +0.3 738,919 + -0.9 738,924 + +0.2 738,927 - +0.5 738,936 - +0.9 738,962 + -0.8 738,962 + -1.0 738,962 + -0.9 738,962 + +0.0 738,962 + +0.1 738,970 - -0.3 738,970 - +0.5 738,970 - -0.4 738,970 - +0.3 738,970 - -0.1 738,970 - +1.3 738,970 - +0.6 738,979 - +0.1 739,008 + -0.4 739,008 + +2.0 739,008 + +1.6 739,008 + +0.3 739,016 - +0.7 739,016 - +1.2 739,016 - +0.6 739,016 - -0.1 739,077 + -1.1 739,077 + +0.5 739,085 - CCNA_00683 0.10 -2.3 739,088 - CCNA_00683 0.10 +1.2 739,092 - CCNA_00683 0.11 -0.3 739,138 + CCNA_00683 0.14 -1.1 739,197 + CCNA_00683 0.17 +0.5 739,263 + CCNA_00683 0.22 -0.1 739,271 - CCNA_00683 0.22 +0.3 739,272 - CCNA_00683 0.22 -2.2 739,305 - CCNA_00683 0.24 -0.0 739,316 - CCNA_00683 0.25 +0.4 739,316 - CCNA_00683 0.25 +0.7 739,327 - CCNA_00683 0.26 -0.1 739,330 - CCNA_00683 0.26 -0.5 739,354 - CCNA_00683 0.28 -2.1 739,358 + CCNA_00683 0.28 -1.4 739,363 + CCNA_00683 0.28 +0.2 739,379 + CCNA_00683 0.29 +0.3 739,381 - CCNA_00683 0.29 +0.3 739,381 - CCNA_00683 0.29 -1.1 739,384 + CCNA_00683 0.30 +0.4 739,384 + CCNA_00683 0.30 -0.2 739,392 - CCNA_00683 0.30 -0.3 739,415 - CCNA_00683 0.32 +0.2 739,417 + CCNA_00683 0.32 +0.0 739,425 - CCNA_00683 0.32 -0.8 739,436 + CCNA_00683 0.33 +0.1 739,454 + CCNA_00683 0.34 +0.6 739,454 + CCNA_00683 0.34 -0.3 739,454 + CCNA_00683 0.34 +0.7 739,456 - CCNA_00683 0.34 +0.6 739,462 - CCNA_00683 0.35 +0.1 739,462 - CCNA_00683 0.35 -0.3 739,462 - CCNA_00683 0.35 +0.9 739,467 - CCNA_00683 0.35 +0.6 739,475 + CCNA_00683 0.36 -0.1 739,475 + CCNA_00683 0.36 +1.6 739,483 - CCNA_00683 0.36 -0.6 739,483 - CCNA_00683 0.36 -0.9 739,500 + CCNA_00683 0.37 +0.7 739,508 - CCNA_00683 0.38 +0.6 739,508 - CCNA_00683 0.38 -0.5
Or see this region's nucleotide sequence