Experiment: PYE with Tetracycline 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00679 and CCNA_00680 are separated by 132 nucleotides CCNA_00680 and CCNA_00681 overlap by 4 nucleotides CCNA_00681 and CCNA_00682 are separated by 94 nucleotides
CCNA_00679: CCNA_00679 - transposase, IS116/IS110/IS902 family, at 735,544 to 736,479
_00679
CCNA_00680: CCNA_00680 - 2-hydroxychromene-2-carboxylate isomerase, at 736,612 to 737,247
_00680
CCNA_00681: CCNA_00681 - short chain dehydrogenase, at 737,244 to 737,981
_00681
CCNA_00682: CCNA_00682 - MarR-family transcriptional regulator, at 738,076 to 738,534
_00682
Position (kb) 736
737
738 Strain fitness (log2 ratio) -2
-1
0
1
2 at 736.489 kb on + strand at 736.499 kb on + strand at 736.499 kb on + strand at 736.499 kb on + strand at 736.499 kb on + strand at 736.525 kb on + strand at 736.533 kb on - strand at 736.564 kb on - strand at 736.573 kb on + strand at 736.582 kb on + strand at 736.596 kb on - strand at 736.609 kb on + strand at 736.631 kb on + strand at 736.639 kb on - strand at 736.653 kb on - strand at 736.674 kb on - strand at 736.729 kb on - strand, within CCNA_00680 at 736.745 kb on + strand, within CCNA_00680 at 736.752 kb on + strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.753 kb on - strand, within CCNA_00680 at 736.760 kb on - strand, within CCNA_00680 at 736.777 kb on - strand, within CCNA_00680 at 736.797 kb on - strand, within CCNA_00680 at 736.832 kb on - strand, within CCNA_00680 at 736.862 kb on + strand, within CCNA_00680 at 736.862 kb on + strand, within CCNA_00680 at 736.862 kb on + strand, within CCNA_00680 at 736.862 kb on + strand, within CCNA_00680 at 736.870 kb on - strand at 736.870 kb on - strand, within CCNA_00680 at 736.883 kb on - strand, within CCNA_00680 at 736.885 kb on + strand, within CCNA_00680 at 736.893 kb on - strand, within CCNA_00680 at 736.893 kb on - strand, within CCNA_00680 at 736.935 kb on - strand, within CCNA_00680 at 736.940 kb on + strand, within CCNA_00680 at 736.940 kb on + strand, within CCNA_00680 at 736.947 kb on - strand, within CCNA_00680 at 736.966 kb on - strand, within CCNA_00680 at 736.981 kb on + strand, within CCNA_00680 at 737.006 kb on + strand, within CCNA_00680 at 737.008 kb on + strand, within CCNA_00680 at 737.065 kb on - strand, within CCNA_00680 at 737.078 kb on + strand, within CCNA_00680 at 737.078 kb on + strand, within CCNA_00680 at 737.126 kb on - strand, within CCNA_00680 at 737.133 kb on - strand, within CCNA_00680 at 737.171 kb on + strand, within CCNA_00680 at 737.232 kb on + strand at 737.250 kb on - strand at 737.258 kb on - strand at 737.260 kb on - strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.270 kb on + strand at 737.278 kb on - strand at 737.297 kb on - strand at 737.317 kb on + strand at 737.341 kb on + strand, within CCNA_00681 at 737.348 kb on + strand, within CCNA_00681 at 737.360 kb on + strand, within CCNA_00681 at 737.397 kb on + strand, within CCNA_00681 at 737.397 kb on + strand, within CCNA_00681 at 737.397 kb on + strand, within CCNA_00681 at 737.405 kb on - strand, within CCNA_00681 at 737.405 kb on - strand, within CCNA_00681 at 737.405 kb on - strand, within CCNA_00681 at 737.405 kb on - strand at 737.405 kb on - strand, within CCNA_00681 at 737.457 kb on - strand, within CCNA_00681 at 737.495 kb on + strand, within CCNA_00681 at 737.570 kb on - strand, within CCNA_00681 at 737.575 kb on - strand, within CCNA_00681 at 737.577 kb on - strand, within CCNA_00681 at 737.606 kb on + strand, within CCNA_00681 at 737.643 kb on + strand, within CCNA_00681 at 737.644 kb on + strand, within CCNA_00681 at 737.655 kb on + strand, within CCNA_00681 at 737.659 kb on - strand, within CCNA_00681 at 737.684 kb on + strand, within CCNA_00681 at 737.684 kb on + strand, within CCNA_00681 at 737.684 kb on + strand, within CCNA_00681 at 737.684 kb on + strand, within CCNA_00681 at 737.689 kb on + strand, within CCNA_00681 at 737.692 kb on - strand, within CCNA_00681 at 737.715 kb on - strand, within CCNA_00681 at 737.717 kb on - strand, within CCNA_00681 at 737.730 kb on - strand, within CCNA_00681 at 737.811 kb on + strand, within CCNA_00681 at 737.811 kb on + strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.819 kb on - strand, within CCNA_00681 at 737.854 kb on - strand, within CCNA_00681 at 737.888 kb on + strand, within CCNA_00681 at 737.888 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand, within CCNA_00681 at 737.890 kb on + strand at 737.895 kb on + strand, within CCNA_00681 at 737.896 kb on - strand, within CCNA_00681 at 737.896 kb on - strand, within CCNA_00681 at 737.896 kb on - strand, within CCNA_00681 at 737.896 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.898 kb on - strand, within CCNA_00681 at 737.903 kb on - strand, within CCNA_00681 at 737.910 kb on + strand at 737.910 kb on + strand at 737.918 kb on - strand at 737.918 kb on - strand at 737.919 kb on - strand at 737.919 kb on - strand at 737.959 kb on - strand at 737.959 kb on - strand at 737.959 kb on - strand at 738.073 kb on + strand at 738.091 kb on - strand at 738.093 kb on - strand at 738.102 kb on + strand at 738.110 kb on - strand at 738.110 kb on - strand at 738.196 kb on - strand, within CCNA_00682 at 738.196 kb on - strand, within CCNA_00682 at 738.196 kb on - strand, within CCNA_00682 at 738.236 kb on - strand, within CCNA_00682
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.00005 mg/ml remove 736,489 + +0.5 736,499 + +0.3 736,499 + +0.7 736,499 + -2.0 736,499 + -0.9 736,525 + -0.8 736,533 - -0.8 736,564 - -1.7 736,573 + +0.3 736,582 + +1.5 736,596 - +1.1 736,609 + +0.4 736,631 + -0.8 736,639 - +1.2 736,653 - -1.7 736,674 - +0.6 736,729 - CCNA_00680 0.18 -0.5 736,745 + CCNA_00680 0.21 +0.2 736,752 + CCNA_00680 0.22 -0.2 736,753 - CCNA_00680 0.22 -0.4 736,753 - CCNA_00680 0.22 -0.3 736,753 - CCNA_00680 0.22 -1.3 736,753 - CCNA_00680 0.22 -2.3 736,753 - CCNA_00680 0.22 -0.5 736,753 - CCNA_00680 0.22 -0.9 736,760 - CCNA_00680 0.23 +1.1 736,777 - CCNA_00680 0.26 +0.3 736,797 - CCNA_00680 0.29 +0.7 736,832 - CCNA_00680 0.35 +0.5 736,862 + CCNA_00680 0.39 -0.2 736,862 + CCNA_00680 0.39 -2.4 736,862 + CCNA_00680 0.39 +0.6 736,862 + CCNA_00680 0.39 +0.6 736,870 - -0.0 736,870 - CCNA_00680 0.41 +0.4 736,883 - CCNA_00680 0.43 +0.2 736,885 + CCNA_00680 0.43 -1.6 736,893 - CCNA_00680 0.44 +2.1 736,893 - CCNA_00680 0.44 -0.2 736,935 - CCNA_00680 0.51 -1.3 736,940 + CCNA_00680 0.52 -1.5 736,940 + CCNA_00680 0.52 -0.5 736,947 - CCNA_00680 0.53 +0.6 736,966 - CCNA_00680 0.56 +0.3 736,981 + CCNA_00680 0.58 +0.4 737,006 + CCNA_00680 0.62 -0.3 737,008 + CCNA_00680 0.62 -1.4 737,065 - CCNA_00680 0.71 -0.9 737,078 + CCNA_00680 0.73 -0.1 737,078 + CCNA_00680 0.73 -1.2 737,126 - CCNA_00680 0.81 -0.0 737,133 - CCNA_00680 0.82 -2.2 737,171 + CCNA_00680 0.88 +1.1 737,232 + -1.8 737,250 - -1.8 737,258 - -1.2 737,260 - +1.8 737,270 + -0.2 737,270 + +0.1 737,270 + +0.4 737,270 + -1.2 737,270 + -2.1 737,270 + +1.0 737,278 - -0.6 737,297 - -1.7 737,317 + -0.8 737,341 + CCNA_00681 0.13 -1.6 737,348 + CCNA_00681 0.14 +0.7 737,360 + CCNA_00681 0.16 +0.2 737,397 + CCNA_00681 0.21 +0.6 737,397 + CCNA_00681 0.21 -0.8 737,397 + CCNA_00681 0.21 -2.5 737,405 - CCNA_00681 0.22 -1.2 737,405 - CCNA_00681 0.22 -1.5 737,405 - CCNA_00681 0.22 -1.8 737,405 - +1.6 737,405 - CCNA_00681 0.22 -1.5 737,457 - CCNA_00681 0.29 +0.6 737,495 + CCNA_00681 0.34 -0.7 737,570 - CCNA_00681 0.44 +0.5 737,575 - CCNA_00681 0.45 +0.5 737,577 - CCNA_00681 0.45 -1.3 737,606 + CCNA_00681 0.49 +0.0 737,643 + CCNA_00681 0.54 +0.3 737,644 + CCNA_00681 0.54 -1.0 737,655 + CCNA_00681 0.56 -0.7 737,659 - CCNA_00681 0.56 -1.8 737,684 + CCNA_00681 0.60 +0.1 737,684 + CCNA_00681 0.60 -1.0 737,684 + CCNA_00681 0.60 -0.6 737,684 + CCNA_00681 0.60 -1.5 737,689 + CCNA_00681 0.60 -0.6 737,692 - CCNA_00681 0.61 +0.9 737,715 - CCNA_00681 0.64 -2.0 737,717 - CCNA_00681 0.64 +0.9 737,730 - CCNA_00681 0.66 -0.9 737,811 + CCNA_00681 0.77 +0.0 737,811 + CCNA_00681 0.77 +2.2 737,819 - CCNA_00681 0.78 -0.8 737,819 - CCNA_00681 0.78 +2.2 737,819 - CCNA_00681 0.78 +0.6 737,819 - CCNA_00681 0.78 -0.7 737,819 - CCNA_00681 0.78 +0.9 737,819 - CCNA_00681 0.78 -1.9 737,819 - CCNA_00681 0.78 +2.0 737,819 - CCNA_00681 0.78 -0.2 737,819 - CCNA_00681 0.78 -1.0 737,854 - CCNA_00681 0.83 +0.3 737,888 + CCNA_00681 0.87 -0.7 737,888 + CCNA_00681 0.87 -0.5 737,890 + CCNA_00681 0.88 -1.0 737,890 + CCNA_00681 0.88 -0.5 737,890 + CCNA_00681 0.88 +2.4 737,890 + CCNA_00681 0.88 +0.6 737,890 + CCNA_00681 0.88 -0.5 737,890 + CCNA_00681 0.88 -2.1 737,890 + CCNA_00681 0.88 -2.0 737,890 + CCNA_00681 0.88 -1.1 737,890 + +1.6 737,895 + CCNA_00681 0.88 -0.1 737,896 - CCNA_00681 0.88 -0.3 737,896 - CCNA_00681 0.88 -2.2 737,896 - CCNA_00681 0.88 +0.6 737,896 - CCNA_00681 0.88 -0.5 737,898 - CCNA_00681 0.89 -1.7 737,898 - CCNA_00681 0.89 -2.2 737,898 - CCNA_00681 0.89 -0.9 737,898 - CCNA_00681 0.89 +0.2 737,898 - CCNA_00681 0.89 -1.5 737,898 - CCNA_00681 0.89 +1.2 737,898 - CCNA_00681 0.89 -0.5 737,898 - CCNA_00681 0.89 +1.2 737,898 - CCNA_00681 0.89 +0.1 737,898 - CCNA_00681 0.89 -0.1 737,903 - CCNA_00681 0.89 -2.5 737,910 + -0.5 737,910 + -1.1 737,918 - -0.5 737,918 - +0.7 737,919 - -0.4 737,919 - -0.6 737,959 - -2.4 737,959 - -0.3 737,959 - +0.9 738,073 + -0.6 738,091 - -0.7 738,093 - -1.2 738,102 + +0.3 738,110 - -1.2 738,110 - +1.6 738,196 - CCNA_00682 0.26 -0.1 738,196 - CCNA_00682 0.26 -0.0 738,196 - CCNA_00682 0.26 +0.0 738,236 - CCNA_00682 0.35 -0.8
Or see this region's nucleotide sequence