Experiment: PYE with Tetracycline 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00478 and CCNA_00479 are separated by 188 nucleotides CCNA_00479 and CCNA_00480 are separated by 68 nucleotides CCNA_00480 and CCNA_00481 are separated by 329 nucleotides CCNA_00481 and CCNA_00482 overlap by 14 nucleotides
CCNA_00478: CCNA_00478 - hypothetical protein, at 494,406 to 495,143
_00478
CCNA_00479: CCNA_00479 - Helix-turn-helix DNA-binding protein, at 495,332 to 495,655
_00479
CCNA_00480: CCNA_00480 - bacteriophage P4 integrase, at 495,724 to 497,022
_00480
CCNA_00481: CCNA_00481 - HipB transcriptional regulator, at 497,352 to 497,597
_00481
CCNA_00482: CCNA_00482 - toxin protein module HipA, at 497,584 to 498,855
_00482
Position (kb) 495
496
497
498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 494.790 kb on - strand, within CCNA_00478 at 494.823 kb on - strand, within CCNA_00478 at 494.862 kb on + strand, within CCNA_00478 at 494.862 kb on + strand, within CCNA_00478 at 494.862 kb on + strand, within CCNA_00478 at 494.870 kb on - strand, within CCNA_00478 at 494.870 kb on - strand, within CCNA_00478 at 494.939 kb on + strand, within CCNA_00478 at 494.982 kb on + strand, within CCNA_00478 at 495.012 kb on + strand, within CCNA_00478 at 495.061 kb on + strand, within CCNA_00478 at 495.215 kb on + strand at 495.245 kb on + strand at 495.245 kb on + strand at 495.253 kb on - strand at 495.253 kb on - strand at 495.292 kb on + strand at 495.292 kb on + strand at 495.300 kb on - strand at 495.300 kb on - strand at 495.300 kb on - strand at 495.307 kb on + strand at 495.307 kb on + strand at 495.307 kb on + strand at 495.307 kb on + strand at 495.307 kb on + strand at 495.307 kb on + strand at 495.310 kb on - strand at 495.315 kb on - strand at 495.315 kb on - strand at 495.315 kb on - strand at 495.315 kb on - strand at 495.324 kb on - strand at 495.405 kb on + strand, within CCNA_00479 at 495.420 kb on + strand, within CCNA_00479 at 495.428 kb on - strand, within CCNA_00479 at 495.428 kb on - strand, within CCNA_00479 at 495.428 kb on - strand, within CCNA_00479 at 495.430 kb on + strand, within CCNA_00479 at 495.447 kb on + strand, within CCNA_00479 at 495.448 kb on + strand, within CCNA_00479 at 495.453 kb on + strand, within CCNA_00479 at 495.456 kb on - strand, within CCNA_00479 at 495.456 kb on - strand, within CCNA_00479 at 495.503 kb on + strand, within CCNA_00479 at 495.503 kb on + strand, within CCNA_00479 at 495.503 kb on + strand, within CCNA_00479 at 495.503 kb on + strand, within CCNA_00479 at 495.503 kb on + strand, within CCNA_00479 at 495.503 kb on + strand, within CCNA_00479 at 495.503 kb on + strand, within CCNA_00479 at 495.503 kb on + strand, within CCNA_00479 at 495.503 kb on + strand, within CCNA_00479 at 495.503 kb on + strand, within CCNA_00479 at 495.511 kb on - strand, within CCNA_00479 at 495.511 kb on - strand, within CCNA_00479 at 495.511 kb on - strand, within CCNA_00479 at 495.511 kb on - strand, within CCNA_00479 at 495.511 kb on - strand, within CCNA_00479 at 495.511 kb on - strand, within CCNA_00479 at 495.511 kb on - strand, within CCNA_00479 at 495.518 kb on - strand, within CCNA_00479 at 495.518 kb on - strand, within CCNA_00479 at 495.526 kb on + strand, within CCNA_00479 at 495.526 kb on + strand, within CCNA_00479 at 495.542 kb on - strand, within CCNA_00479 at 495.561 kb on + strand, within CCNA_00479 at 495.561 kb on + strand, within CCNA_00479 at 495.569 kb on - strand, within CCNA_00479 at 495.569 kb on - strand, within CCNA_00479 at 495.569 kb on - strand, within CCNA_00479 at 495.569 kb on - strand, within CCNA_00479 at 495.593 kb on + strand, within CCNA_00479 at 495.594 kb on + strand, within CCNA_00479 at 495.594 kb on + strand, within CCNA_00479 at 495.594 kb on + strand, within CCNA_00479 at 495.622 kb on - strand, within CCNA_00479 at 495.654 kb on + strand at 495.663 kb on + strand at 495.699 kb on - strand at 495.721 kb on + strand at 495.721 kb on + strand at 495.729 kb on - strand at 495.729 kb on - strand at 495.738 kb on - strand at 495.749 kb on + strand at 495.757 kb on - strand at 495.761 kb on + strand at 495.769 kb on - strand at 495.854 kb on + strand, within CCNA_00480 at 495.908 kb on + strand, within CCNA_00480 at 495.927 kb on - strand, within CCNA_00480 at 495.933 kb on + strand, within CCNA_00480 at 495.943 kb on + strand, within CCNA_00480 at 495.951 kb on - strand, within CCNA_00480 at 495.951 kb on - strand, within CCNA_00480 at 495.959 kb on + strand, within CCNA_00480 at 495.959 kb on + strand, within CCNA_00480 at 495.959 kb on + strand, within CCNA_00480 at 495.959 kb on + strand, within CCNA_00480 at 495.967 kb on - strand, within CCNA_00480 at 495.967 kb on - strand, within CCNA_00480 at 495.967 kb on - strand, within CCNA_00480 at 496.012 kb on + strand, within CCNA_00480 at 496.020 kb on - strand, within CCNA_00480 at 496.020 kb on - strand, within CCNA_00480 at 496.122 kb on - strand, within CCNA_00480 at 496.132 kb on - strand, within CCNA_00480 at 496.157 kb on + strand, within CCNA_00480 at 496.158 kb on + strand, within CCNA_00480 at 496.165 kb on - strand, within CCNA_00480 at 496.165 kb on - strand, within CCNA_00480 at 496.181 kb on + strand, within CCNA_00480 at 496.181 kb on + strand, within CCNA_00480 at 496.189 kb on - strand, within CCNA_00480 at 496.189 kb on - strand, within CCNA_00480 at 496.189 kb on - strand, within CCNA_00480 at 496.230 kb on + strand, within CCNA_00480 at 496.249 kb on + strand, within CCNA_00480 at 496.294 kb on + strand, within CCNA_00480 at 496.302 kb on - strand, within CCNA_00480 at 496.327 kb on + strand, within CCNA_00480 at 496.328 kb on - strand, within CCNA_00480 at 496.333 kb on + strand, within CCNA_00480 at 496.333 kb on + strand, within CCNA_00480 at 496.333 kb on + strand, within CCNA_00480 at 496.333 kb on - strand, within CCNA_00480 at 496.346 kb on - strand, within CCNA_00480 at 496.372 kb on - strand, within CCNA_00480 at 496.387 kb on + strand, within CCNA_00480 at 496.417 kb on + strand, within CCNA_00480 at 496.417 kb on + strand, within CCNA_00480 at 496.425 kb on - strand, within CCNA_00480 at 496.443 kb on + strand, within CCNA_00480 at 496.453 kb on + strand, within CCNA_00480 at 496.453 kb on + strand, within CCNA_00480 at 496.453 kb on + strand, within CCNA_00480 at 496.461 kb on - strand, within CCNA_00480 at 496.461 kb on - strand, within CCNA_00480 at 496.463 kb on + strand, within CCNA_00480 at 496.463 kb on + strand, within CCNA_00480 at 496.463 kb on + strand, within CCNA_00480 at 496.471 kb on - strand, within CCNA_00480 at 496.499 kb on + strand, within CCNA_00480 at 496.501 kb on - strand, within CCNA_00480 at 496.518 kb on + strand, within CCNA_00480 at 496.529 kb on + strand, within CCNA_00480 at 496.529 kb on + strand, within CCNA_00480 at 496.537 kb on - strand, within CCNA_00480 at 496.541 kb on - strand, within CCNA_00480 at 496.554 kb on - strand, within CCNA_00480 at 496.585 kb on + strand, within CCNA_00480 at 496.588 kb on - strand, within CCNA_00480 at 496.589 kb on - strand, within CCNA_00480 at 496.593 kb on - strand, within CCNA_00480 at 496.609 kb on + strand, within CCNA_00480 at 496.617 kb on - strand, within CCNA_00480 at 496.617 kb on - strand, within CCNA_00480 at 496.631 kb on - strand, within CCNA_00480 at 496.633 kb on + strand, within CCNA_00480 at 496.725 kb on - strand, within CCNA_00480 at 496.793 kb on + strand, within CCNA_00480 at 496.796 kb on - strand, within CCNA_00480 at 496.808 kb on + strand, within CCNA_00480 at 496.808 kb on + strand, within CCNA_00480 at 496.816 kb on - strand, within CCNA_00480 at 496.819 kb on + strand, within CCNA_00480 at 496.820 kb on + strand, within CCNA_00480 at 496.820 kb on + strand, within CCNA_00480 at 496.821 kb on - strand, within CCNA_00480 at 496.821 kb on - strand, within CCNA_00480 at 496.842 kb on + strand, within CCNA_00480 at 496.842 kb on + strand, within CCNA_00480 at 496.842 kb on + strand, within CCNA_00480 at 496.850 kb on - strand, within CCNA_00480 at 496.850 kb on - strand, within CCNA_00480 at 496.850 kb on - strand, within CCNA_00480 at 496.850 kb on - strand, within CCNA_00480 at 496.850 kb on - strand, within CCNA_00480 at 496.850 kb on - strand, within CCNA_00480 at 496.850 kb on - strand, within CCNA_00480 at 496.850 kb on - strand, within CCNA_00480 at 496.858 kb on - strand, within CCNA_00480 at 496.867 kb on + strand, within CCNA_00480 at 496.867 kb on + strand, within CCNA_00480 at 496.868 kb on - strand, within CCNA_00480 at 496.881 kb on - strand, within CCNA_00480 at 496.887 kb on - strand, within CCNA_00480 at 496.889 kb on + strand, within CCNA_00480 at 496.897 kb on - strand at 496.903 kb on - strand at 496.961 kb on + strand at 496.969 kb on - strand at 496.969 kb on - strand at 496.969 kb on - strand at 496.969 kb on - strand at 496.986 kb on + strand at 497.033 kb on + strand at 497.033 kb on + strand at 497.033 kb on + strand at 497.033 kb on + strand at 497.033 kb on + strand at 497.041 kb on - strand at 497.041 kb on - strand at 497.041 kb on - strand at 497.041 kb on - strand at 497.052 kb on + strand at 497.059 kb on + strand at 497.060 kb on - strand at 497.067 kb on - strand at 497.079 kb on + strand at 497.145 kb on + strand at 497.177 kb on + strand at 497.177 kb on + strand at 497.177 kb on + strand at 497.185 kb on - strand at 497.201 kb on + strand at 497.212 kb on + strand at 497.220 kb on - strand at 497.227 kb on + strand at 497.227 kb on - strand at 497.229 kb on + strand at 497.259 kb on + strand at 497.267 kb on - strand at 497.370 kb on + strand at 497.370 kb on + strand at 497.370 kb on + strand at 497.378 kb on - strand, within CCNA_00481 at 497.561 kb on + strand, within CCNA_00481 at 497.566 kb on + strand, within CCNA_00481 at 497.566 kb on + strand, within CCNA_00481 at 497.574 kb on - strand at 497.606 kb on - strand at 497.617 kb on + strand at 497.642 kb on + strand at 497.654 kb on - strand at 497.673 kb on + strand at 497.695 kb on + strand at 497.695 kb on + strand at 497.703 kb on - strand at 497.705 kb on + strand at 497.721 kb on + strand, within CCNA_00482 at 497.734 kb on - strand, within CCNA_00482 at 497.772 kb on - strand, within CCNA_00482 at 497.772 kb on - strand, within CCNA_00482 at 497.812 kb on - strand, within CCNA_00482 at 497.813 kb on - strand, within CCNA_00482 at 497.813 kb on - strand, within CCNA_00482 at 497.846 kb on + strand, within CCNA_00482 at 497.846 kb on + strand, within CCNA_00482 at 497.862 kb on - strand, within CCNA_00482 at 497.890 kb on + strand, within CCNA_00482 at 497.898 kb on - strand, within CCNA_00482 at 497.898 kb on - strand, within CCNA_00482 at 497.898 kb on - strand, within CCNA_00482 at 497.913 kb on - strand, within CCNA_00482 at 497.925 kb on + strand, within CCNA_00482 at 497.950 kb on - strand, within CCNA_00482 at 497.994 kb on - strand, within CCNA_00482
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Tetracycline 0.00005 mg/ml remove 494,790 - CCNA_00478 0.52 -3.0 494,823 - CCNA_00478 0.57 -0.3 494,862 + CCNA_00478 0.62 -0.4 494,862 + CCNA_00478 0.62 -0.6 494,862 + CCNA_00478 0.62 +1.0 494,870 - CCNA_00478 0.63 -0.7 494,870 - CCNA_00478 0.63 -1.1 494,939 + CCNA_00478 0.72 -2.5 494,982 + CCNA_00478 0.78 -1.0 495,012 + CCNA_00478 0.82 +1.6 495,061 + CCNA_00478 0.89 -2.7 495,215 + -0.3 495,245 + -0.2 495,245 + -1.6 495,253 - -1.3 495,253 - +1.2 495,292 + -2.4 495,292 + -0.8 495,300 - -1.1 495,300 - -0.1 495,300 - -0.2 495,307 + -1.4 495,307 + -1.5 495,307 + -0.2 495,307 + -2.5 495,307 + -0.3 495,307 + -2.1 495,310 - -0.1 495,315 - +0.2 495,315 - +0.6 495,315 - -0.4 495,315 - -1.0 495,324 - -1.6 495,405 + CCNA_00479 0.23 -0.7 495,420 + CCNA_00479 0.27 -0.7 495,428 - CCNA_00479 0.30 -0.3 495,428 - CCNA_00479 0.30 -1.2 495,428 - CCNA_00479 0.30 +3.6 495,430 + CCNA_00479 0.30 -0.3 495,447 + CCNA_00479 0.35 -1.5 495,448 + CCNA_00479 0.36 +0.6 495,453 + CCNA_00479 0.37 -2.1 495,456 - CCNA_00479 0.38 -2.4 495,456 - CCNA_00479 0.38 -3.3 495,503 + CCNA_00479 0.53 +1.3 495,503 + CCNA_00479 0.53 +1.3 495,503 + CCNA_00479 0.53 -0.9 495,503 + CCNA_00479 0.53 +1.1 495,503 + CCNA_00479 0.53 -1.5 495,503 + CCNA_00479 0.53 -2.3 495,503 + CCNA_00479 0.53 -0.8 495,503 + CCNA_00479 0.53 -3.0 495,503 + CCNA_00479 0.53 -3.2 495,503 + CCNA_00479 0.53 -0.6 495,511 - CCNA_00479 0.55 +0.9 495,511 - CCNA_00479 0.55 -1.8 495,511 - CCNA_00479 0.55 -0.6 495,511 - CCNA_00479 0.55 -1.1 495,511 - CCNA_00479 0.55 +0.1 495,511 - CCNA_00479 0.55 -0.6 495,511 - CCNA_00479 0.55 +0.1 495,518 - CCNA_00479 0.57 -0.7 495,518 - CCNA_00479 0.57 +0.4 495,526 + CCNA_00479 0.60 -0.0 495,526 + CCNA_00479 0.60 +0.2 495,542 - CCNA_00479 0.65 -1.8 495,561 + CCNA_00479 0.71 -0.4 495,561 + CCNA_00479 0.71 +0.6 495,569 - CCNA_00479 0.73 -0.1 495,569 - CCNA_00479 0.73 +0.1 495,569 - CCNA_00479 0.73 +0.1 495,569 - CCNA_00479 0.73 -1.0 495,593 + CCNA_00479 0.81 +0.6 495,594 + CCNA_00479 0.81 -1.1 495,594 + CCNA_00479 0.81 -0.6 495,594 + CCNA_00479 0.81 +0.3 495,622 - CCNA_00479 0.90 +1.0 495,654 + -0.8 495,663 + -1.4 495,699 - -1.4 495,721 + +0.6 495,721 + -1.4 495,729 - -1.8 495,729 - -2.5 495,738 - -0.9 495,749 + -2.7 495,757 - -0.4 495,761 + -2.8 495,769 - -1.3 495,854 + CCNA_00480 0.10 -0.3 495,908 + CCNA_00480 0.14 +0.9 495,927 - CCNA_00480 0.16 -0.9 495,933 + CCNA_00480 0.16 -2.9 495,943 + CCNA_00480 0.17 -0.1 495,951 - CCNA_00480 0.17 -1.8 495,951 - CCNA_00480 0.17 -0.3 495,959 + CCNA_00480 0.18 -1.7 495,959 + CCNA_00480 0.18 +1.7 495,959 + CCNA_00480 0.18 -1.2 495,959 + CCNA_00480 0.18 -2.4 495,967 - CCNA_00480 0.19 +0.1 495,967 - CCNA_00480 0.19 -0.4 495,967 - CCNA_00480 0.19 +0.6 496,012 + CCNA_00480 0.22 -1.2 496,020 - CCNA_00480 0.23 -0.9 496,020 - CCNA_00480 0.23 +1.9 496,122 - CCNA_00480 0.31 +0.1 496,132 - CCNA_00480 0.31 -0.2 496,157 + CCNA_00480 0.33 -1.1 496,158 + CCNA_00480 0.33 -0.2 496,165 - CCNA_00480 0.34 -1.8 496,165 - CCNA_00480 0.34 +0.4 496,181 + CCNA_00480 0.35 -0.4 496,181 + CCNA_00480 0.35 -1.9 496,189 - CCNA_00480 0.36 -0.9 496,189 - CCNA_00480 0.36 -1.9 496,189 - CCNA_00480 0.36 -0.3 496,230 + CCNA_00480 0.39 -0.8 496,249 + CCNA_00480 0.40 +0.0 496,294 + CCNA_00480 0.44 +0.6 496,302 - CCNA_00480 0.44 -0.8 496,327 + CCNA_00480 0.46 +1.1 496,328 - CCNA_00480 0.46 -1.6 496,333 + CCNA_00480 0.47 +0.4 496,333 + CCNA_00480 0.47 -0.3 496,333 + CCNA_00480 0.47 -0.4 496,333 - CCNA_00480 0.47 -0.2 496,346 - CCNA_00480 0.48 -2.3 496,372 - CCNA_00480 0.50 +0.4 496,387 + CCNA_00480 0.51 -2.0 496,417 + CCNA_00480 0.53 -1.3 496,417 + CCNA_00480 0.53 +0.1 496,425 - CCNA_00480 0.54 -0.1 496,443 + CCNA_00480 0.55 -2.2 496,453 + CCNA_00480 0.56 -0.1 496,453 + CCNA_00480 0.56 -2.0 496,453 + CCNA_00480 0.56 -1.8 496,461 - CCNA_00480 0.57 -0.0 496,461 - CCNA_00480 0.57 -1.1 496,463 + CCNA_00480 0.57 -0.3 496,463 + CCNA_00480 0.57 -0.7 496,463 + CCNA_00480 0.57 -2.0 496,471 - CCNA_00480 0.58 -1.2 496,499 + CCNA_00480 0.60 +2.1 496,501 - CCNA_00480 0.60 +0.1 496,518 + CCNA_00480 0.61 -1.7 496,529 + CCNA_00480 0.62 -2.7 496,529 + CCNA_00480 0.62 -0.1 496,537 - CCNA_00480 0.63 -0.7 496,541 - CCNA_00480 0.63 +0.2 496,554 - CCNA_00480 0.64 -1.2 496,585 + CCNA_00480 0.66 -0.8 496,588 - CCNA_00480 0.67 -1.8 496,589 - CCNA_00480 0.67 -1.6 496,593 - CCNA_00480 0.67 +1.7 496,609 + CCNA_00480 0.68 -2.3 496,617 - CCNA_00480 0.69 -1.4 496,617 - CCNA_00480 0.69 +0.6 496,631 - CCNA_00480 0.70 -0.5 496,633 + CCNA_00480 0.70 +0.1 496,725 - CCNA_00480 0.77 -0.3 496,793 + CCNA_00480 0.82 -0.9 496,796 - CCNA_00480 0.83 -1.4 496,808 + CCNA_00480 0.83 +1.1 496,808 + CCNA_00480 0.83 -1.0 496,816 - CCNA_00480 0.84 +0.2 496,819 + CCNA_00480 0.84 +0.3 496,820 + CCNA_00480 0.84 -1.3 496,820 + CCNA_00480 0.84 -1.6 496,821 - CCNA_00480 0.84 -1.7 496,821 - CCNA_00480 0.84 -0.3 496,842 + CCNA_00480 0.86 +0.8 496,842 + CCNA_00480 0.86 -2.7 496,842 + CCNA_00480 0.86 +0.3 496,850 - CCNA_00480 0.87 +0.8 496,850 - CCNA_00480 0.87 -1.5 496,850 - CCNA_00480 0.87 +0.1 496,850 - CCNA_00480 0.87 +0.3 496,850 - CCNA_00480 0.87 -0.9 496,850 - CCNA_00480 0.87 -2.7 496,850 - CCNA_00480 0.87 +1.9 496,850 - CCNA_00480 0.87 -1.4 496,858 - CCNA_00480 0.87 -0.4 496,867 + CCNA_00480 0.88 +0.8 496,867 + CCNA_00480 0.88 -0.8 496,868 - CCNA_00480 0.88 -2.0 496,881 - CCNA_00480 0.89 +0.3 496,887 - CCNA_00480 0.90 -0.1 496,889 + CCNA_00480 0.90 -0.2 496,897 - +1.5 496,903 - +0.5 496,961 + -0.2 496,969 - -0.5 496,969 - -0.3 496,969 - +0.0 496,969 - +0.4 496,986 + -0.1 497,033 + -0.4 497,033 + -0.4 497,033 + -1.4 497,033 + +0.6 497,033 + -0.3 497,041 - +1.9 497,041 - +0.1 497,041 - +1.3 497,041 - -1.2 497,052 + -0.1 497,059 + -0.4 497,060 - -0.2 497,067 - -0.3 497,079 + -0.1 497,145 + +0.1 497,177 + -0.0 497,177 + +0.9 497,177 + -2.0 497,185 - +1.9 497,201 + -1.8 497,212 + -1.6 497,220 - +0.4 497,227 + +1.6 497,227 - +0.6 497,229 + -1.0 497,259 + +0.1 497,267 - +1.7 497,370 + +1.5 497,370 + +1.1 497,370 + +1.2 497,378 - CCNA_00481 0.11 -0.6 497,561 + CCNA_00481 0.85 -0.1 497,566 + CCNA_00481 0.87 +0.8 497,566 + CCNA_00481 0.87 +0.6 497,574 - -1.4 497,606 - -0.1 497,617 + -0.8 497,642 + -0.9 497,654 - -0.5 497,673 + +0.8 497,695 + -0.4 497,695 + -1.3 497,703 - +1.7 497,705 + +0.6 497,721 + CCNA_00482 0.11 -1.6 497,734 - CCNA_00482 0.12 -1.2 497,772 - CCNA_00482 0.15 +0.3 497,772 - CCNA_00482 0.15 -1.7 497,812 - CCNA_00482 0.18 -0.7 497,813 - CCNA_00482 0.18 +1.3 497,813 - CCNA_00482 0.18 +0.1 497,846 + CCNA_00482 0.21 -0.4 497,846 + CCNA_00482 0.21 -0.2 497,862 - CCNA_00482 0.22 -1.0 497,890 + CCNA_00482 0.24 -0.9 497,898 - CCNA_00482 0.25 -0.7 497,898 - CCNA_00482 0.25 -1.5 497,898 - CCNA_00482 0.25 -1.4 497,913 - CCNA_00482 0.26 -1.4 497,925 + CCNA_00482 0.27 +0.6 497,950 - CCNA_00482 0.29 -0.4 497,994 - CCNA_00482 0.32 -1.6
Or see this region's nucleotide sequence