Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14070

Experiment: Recovery broth with Rifampicin 1e-04 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Recovery broth with Rifampicin 1e-04 mM
930,328	+				-0.3
930,328	+				-1.1
930,337	+				-0.3
930,339	+				+0.2
930,345	-				-0.1
930,345	-				+0.5
930,365	+		BBR_RS14065	0.15	+0.4
930,393	+		BBR_RS14065	0.23	-0.1
930,606	+		BBR_RS14065	0.80	-0.7
930,606	+		BBR_RS14065	0.80	-0.4
930,633	+		BBR_RS14065	0.87	-0.4
930,643	+		BBR_RS14065	0.90	-0.5
930,662	-				-1.0
930,666	+				+0.0
930,666	+				-0.2
930,700	+				-0.3
930,700	+				-0.3
930,700	+				-0.3
930,757	+				-0.3
930,850	+				+0.5
930,855	+				+1.0
930,912	-				-1.5
930,913	-				+0.8
930,913	-				-0.1
930,913	-				-0.8
930,913	-				-0.6
930,926	-				+0.4
930,949	+				-0.9
930,957	-				+0.1
930,957	-				-2.3
931,034	-				-0.2
931,051	-				-1.0
931,061	+				-0.2
931,069	-				+0.1
931,075	+				-0.1
931,083	-				-1.0
931,083	-				+0.9
931,093	-				+0.5
931,142	-				+0.7
931,175	-				+0.3
931,255	-				-0.0
931,279	-				-0.2
931,292	+				+1.2
931,292	+				-0.9
931,294	+				-1.2
931,294	+				+1.6
931,302	-				-1.0
931,302	-				-1.2
931,327	+				+1.4
931,327	+				-0.9
931,337	-				-0.2
931,337	-				+0.8
931,527	-		BBR_RS14070	0.15	+3.1
931,565	-		BBR_RS14070	0.18	+1.7
931,652	-		BBR_RS14070	0.24	+0.9
931,652	-		BBR_RS14070	0.24	+1.1
931,653	-		BBR_RS14070	0.24	-0.8
931,698	-		BBR_RS14070	0.27	+0.1
931,725	+		BBR_RS14070	0.29	+1.1
931,733	-		BBR_RS14070	0.29	+2.1
931,772	+		BBR_RS14070	0.32	+2.1
931,785	-		BBR_RS14070	0.33	+0.5
931,800	-		BBR_RS14070	0.34	+0.3
931,800	-		BBR_RS14070	0.34	+0.5
931,835	+		BBR_RS14070	0.36	+0.5
931,858	+		BBR_RS14070	0.38	+0.5
931,858	+		BBR_RS14070	0.38	+1.7
932,067	-		BBR_RS14070	0.52	+0.1
932,121	+		BBR_RS14070	0.55	-0.1
932,155	-		BBR_RS14070	0.58	+1.1
932,159	-		BBR_RS14070	0.58	+0.5
932,228	-		BBR_RS14070	0.62	+2.4
932,264	+		BBR_RS14070	0.65	-1.2
932,270	-		BBR_RS14070	0.65	+1.6
932,285	+		BBR_RS14070	0.66	+3.7
932,295	+		BBR_RS14070	0.67	+1.1
932,405	+		BBR_RS14070	0.74	+0.0
932,448	+		BBR_RS14070	0.77	+0.9
932,479	-		BBR_RS14070	0.79	+0.1
932,489	-		BBR_RS14070	0.80	+1.0
932,529	-		BBR_RS14070	0.83	+1.1
932,539	-		BBR_RS14070	0.83	-0.7
932,776	-				+1.3
932,937	+				-0.4
932,939	+				+0.6
932,947	-				+0.3
933,003	+				-0.6
933,083	-				-0.5
933,138	-				-0.0
933,140	+				+1.0
933,140	+				-1.2
933,148	-				+0.0
933,289	+				+0.1
933,487	-		BBR_RS14075	0.24	-0.3
933,494	+		BBR_RS14075	0.25	-0.2
933,494	+		BBR_RS14075	0.25	-1.2
933,494	+		BBR_RS14075	0.25	+0.3
933,671	+		BBR_RS14075	0.38	-0.7
933,718	+		BBR_RS14075	0.42	-2.0
933,741	+		BBR_RS14075	0.44	-0.6