Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS32845

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS32835 and AZOBR_RS32840 are separated by 7 nucleotidesAZOBR_RS32840 and AZOBR_RS32845 are separated by 425 nucleotidesAZOBR_RS32845 and AZOBR_RS32850 are separated by 5 nucleotidesAZOBR_RS32850 and AZOBR_RS32855 are separated by 3 nucleotides AZOBR_RS32835: AZOBR_RS32835 - hypothetical protein, at 49,272 to 49,826 _RS32835 AZOBR_RS32840: AZOBR_RS32840 - hypothetical protein, at 49,834 to 50,082 _RS32840 AZOBR_RS32845: AZOBR_RS32845 - membrane protein of unknown function, at 50,508 to 51,824 _RS32845 AZOBR_RS32850: AZOBR_RS32850 - hypothetical protein, at 51,830 to 52,285 _RS32850 AZOBR_RS32855: AZOBR_RS32855 - hypothetical protein, at 52,289 to 52,894 _RS32855 Position (kb) 50 51 52Strain fitness (log2 ratio) -1 0 1 2 3at 50.171 kb on + strandat 50.171 kb on + strandat 50.171 kb on + strandat 50.171 kb on + strandat 50.197 kb on + strandat 50.197 kb on + strandat 50.198 kb on - strandat 50.205 kb on + strandat 50.229 kb on - strandat 50.301 kb on + strandat 50.335 kb on + strandat 50.335 kb on + strandat 50.335 kb on + strandat 50.366 kb on + strandat 50.366 kb on + strandat 50.446 kb on + strandat 50.447 kb on - strandat 50.739 kb on + strand, within AZOBR_RS32845at 50.913 kb on + strand, within AZOBR_RS32845at 50.914 kb on - strand, within AZOBR_RS32845at 50.986 kb on - strand, within AZOBR_RS32845at 51.044 kb on - strand, within AZOBR_RS32845at 51.069 kb on + strand, within AZOBR_RS32845at 51.070 kb on - strand, within AZOBR_RS32845at 51.175 kb on - strand, within AZOBR_RS32845at 51.243 kb on + strand, within AZOBR_RS32845at 51.244 kb on - strand, within AZOBR_RS32845at 51.284 kb on + strand, within AZOBR_RS32845at 51.285 kb on - strand, within AZOBR_RS32845at 51.420 kb on + strand, within AZOBR_RS32845at 51.644 kb on + strand, within AZOBR_RS32845at 51.644 kb on + strand, within AZOBR_RS32845at 51.644 kb on + strand, within AZOBR_RS32845at 51.786 kb on + strandat 51.831 kb on + strandat 51.832 kb on - strandat 51.999 kb on + strand, within AZOBR_RS32850at 52.314 kb on + strandat 52.314 kb on + strandat 52.784 kb on + strand, within AZOBR_RS32855at 52.784 kb on + strand, within AZOBR_RS32855at 52.785 kb on - strand, within AZOBR_RS32855at 52.785 kb on - strand, within AZOBR_RS32855at 52.803 kb on + strandat 52.803 kb on + strand, within AZOBR_RS32855at 52.803 kb on + strand, within AZOBR_RS32855at 52.803 kb on + strand, within AZOBR_RS32855at 52.804 kb on - strand, within AZOBR_RS32855

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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50,171 + +2.5
50,171 + +2.2
50,171 + +1.9
50,171 + +2.1
50,197 + +2.0
50,197 + +0.9
50,198 - +0.4
50,205 + +2.2
50,229 - -0.2
50,301 + +2.1
50,335 + +2.2
50,335 + +1.4
50,335 + +2.0
50,366 + +1.3
50,366 + +1.7
50,446 + +2.1
50,447 - +1.2
50,739 + AZOBR_RS32845 0.18 +0.4
50,913 + AZOBR_RS32845 0.31 +2.2
50,914 - AZOBR_RS32845 0.31 -0.1
50,986 - AZOBR_RS32845 0.36 +0.5
51,044 - AZOBR_RS32845 0.41 -1.1
51,069 + AZOBR_RS32845 0.43 +1.3
51,070 - AZOBR_RS32845 0.43 +0.1
51,175 - AZOBR_RS32845 0.51 -0.3
51,243 + AZOBR_RS32845 0.56 -0.3
51,244 - AZOBR_RS32845 0.56 -0.0
51,284 + AZOBR_RS32845 0.59 +2.3
51,285 - AZOBR_RS32845 0.59 +0.2
51,420 + AZOBR_RS32845 0.69 +2.3
51,644 + AZOBR_RS32845 0.86 +1.7
51,644 + AZOBR_RS32845 0.86 +3.3
51,644 + AZOBR_RS32845 0.86 +1.4
51,786 + +1.8
51,831 + +1.1
51,832 - -1.1
51,999 + AZOBR_RS32850 0.37 +1.6
52,314 + +2.2
52,314 + +1.7
52,784 + AZOBR_RS32855 0.82 +0.5
52,784 + AZOBR_RS32855 0.82 +0.6
52,785 - AZOBR_RS32855 0.82 +0.6
52,785 - AZOBR_RS32855 0.82 -0.1
52,803 + +0.6
52,803 + AZOBR_RS32855 0.85 -0.8
52,803 + AZOBR_RS32855 0.85 -1.4
52,803 + AZOBR_RS32855 0.85 -0.1
52,804 - AZOBR_RS32855 0.85 -0.1

Or see this region's nucleotide sequence