Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09355

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09350 and AZOBR_RS09355 are separated by 205 nucleotidesAZOBR_RS09355 and AZOBR_RS09360 are separated by 90 nucleotides AZOBR_RS09350: AZOBR_RS09350 - ATPase, at 1,954,402 to 1,954,812 _RS09350 AZOBR_RS09355: AZOBR_RS09355 - ATPase, at 1,955,018 to 1,955,386 _RS09355 AZOBR_RS09360: AZOBR_RS09360 - peptidoglycan-binding domain 1 protein, at 1,955,477 to 1,957,057 _RS09360 Position (kb) 1955 1956Strain fitness (log2 ratio) -1 0 1 2at 1954.181 kb on + strandat 1954.187 kb on + strandat 1954.487 kb on - strand, within AZOBR_RS09350at 1954.487 kb on - strand, within AZOBR_RS09350at 1954.487 kb on - strand, within AZOBR_RS09350at 1954.636 kb on + strand, within AZOBR_RS09350at 1954.637 kb on - strand, within AZOBR_RS09350at 1954.637 kb on - strand, within AZOBR_RS09350at 1954.811 kb on - strandat 1954.811 kb on - strandat 1955.069 kb on + strand, within AZOBR_RS09355at 1955.069 kb on + strand, within AZOBR_RS09355at 1955.069 kb on + strand, within AZOBR_RS09355at 1955.069 kb on + strand, within AZOBR_RS09355at 1955.070 kb on - strand, within AZOBR_RS09355at 1955.070 kb on - strand, within AZOBR_RS09355at 1955.070 kb on - strand, within AZOBR_RS09355at 1955.070 kb on - strand, within AZOBR_RS09355at 1955.070 kb on - strand, within AZOBR_RS09355at 1955.070 kb on - strand, within AZOBR_RS09355at 1955.071 kb on + strand, within AZOBR_RS09355at 1955.071 kb on + strand, within AZOBR_RS09355at 1955.071 kb on + strand, within AZOBR_RS09355at 1955.071 kb on + strandat 1955.071 kb on + strand, within AZOBR_RS09355at 1955.072 kb on - strand, within AZOBR_RS09355at 1955.072 kb on - strand, within AZOBR_RS09355at 1955.072 kb on - strand, within AZOBR_RS09355at 1955.072 kb on - strand, within AZOBR_RS09355at 1955.072 kb on - strand, within AZOBR_RS09355at 1955.072 kb on - strand, within AZOBR_RS09355at 1955.072 kb on - strand, within AZOBR_RS09355at 1955.072 kb on - strand, within AZOBR_RS09355at 1955.075 kb on + strand, within AZOBR_RS09355at 1955.075 kb on + strand, within AZOBR_RS09355at 1955.076 kb on - strand, within AZOBR_RS09355at 1955.076 kb on - strand, within AZOBR_RS09355at 1955.076 kb on - strand, within AZOBR_RS09355at 1955.252 kb on + strand, within AZOBR_RS09355at 1955.252 kb on + strand, within AZOBR_RS09355at 1955.252 kb on + strand, within AZOBR_RS09355at 1955.252 kb on + strand, within AZOBR_RS09355at 1955.253 kb on - strand, within AZOBR_RS09355at 1955.253 kb on - strand, within AZOBR_RS09355at 1955.253 kb on - strand, within AZOBR_RS09355at 1955.253 kb on - strand, within AZOBR_RS09355at 1955.253 kb on - strand, within AZOBR_RS09355at 1955.285 kb on + strand, within AZOBR_RS09355at 1955.286 kb on - strand, within AZOBR_RS09355at 1955.847 kb on - strand, within AZOBR_RS09360at 1955.888 kb on + strand, within AZOBR_RS09360at 1955.888 kb on + strand, within AZOBR_RS09360at 1955.889 kb on - strand, within AZOBR_RS09360at 1955.892 kb on - strand, within AZOBR_RS09360at 1955.892 kb on - strand, within AZOBR_RS09360at 1955.892 kb on - strand, within AZOBR_RS09360at 1955.892 kb on - strand, within AZOBR_RS09360at 1955.892 kb on - strand, within AZOBR_RS09360at 1956.248 kb on + strand, within AZOBR_RS09360at 1956.345 kb on - strand, within AZOBR_RS09360at 1956.345 kb on - strand, within AZOBR_RS09360at 1956.345 kb on - strand, within AZOBR_RS09360at 1956.345 kb on - strand, within AZOBR_RS09360at 1956.375 kb on - strand, within AZOBR_RS09360at 1956.375 kb on - strand, within AZOBR_RS09360at 1956.375 kb on - strand, within AZOBR_RS09360at 1956.377 kb on + strand, within AZOBR_RS09360at 1956.377 kb on + strand, within AZOBR_RS09360at 1956.378 kb on - strand, within AZOBR_RS09360at 1956.378 kb on - strand, within AZOBR_RS09360

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,954,181 + -0.4
1,954,187 + +0.2
1,954,487 - AZOBR_RS09350 0.21 +0.6
1,954,487 - AZOBR_RS09350 0.21 +1.3
1,954,487 - AZOBR_RS09350 0.21 +0.8
1,954,636 + AZOBR_RS09350 0.57 -0.4
1,954,637 - AZOBR_RS09350 0.57 +0.4
1,954,637 - AZOBR_RS09350 0.57 +1.1
1,954,811 - -0.5
1,954,811 - +0.3
1,955,069 + AZOBR_RS09355 0.14 +0.7
1,955,069 + AZOBR_RS09355 0.14 +0.6
1,955,069 + AZOBR_RS09355 0.14 -0.6
1,955,069 + AZOBR_RS09355 0.14 +0.1
1,955,070 - AZOBR_RS09355 0.14 +0.6
1,955,070 - AZOBR_RS09355 0.14 +0.6
1,955,070 - AZOBR_RS09355 0.14 +1.0
1,955,070 - AZOBR_RS09355 0.14 -0.1
1,955,070 - AZOBR_RS09355 0.14 +0.2
1,955,070 - AZOBR_RS09355 0.14 -0.5
1,955,071 + AZOBR_RS09355 0.14 -0.7
1,955,071 + AZOBR_RS09355 0.14 -0.2
1,955,071 + AZOBR_RS09355 0.14 -0.7
1,955,071 + +0.8
1,955,071 + AZOBR_RS09355 0.14 -0.9
1,955,072 - AZOBR_RS09355 0.15 +0.5
1,955,072 - AZOBR_RS09355 0.15 +0.7
1,955,072 - AZOBR_RS09355 0.15 -0.0
1,955,072 - AZOBR_RS09355 0.15 +0.6
1,955,072 - AZOBR_RS09355 0.15 +0.7
1,955,072 - AZOBR_RS09355 0.15 +0.1
1,955,072 - AZOBR_RS09355 0.15 -0.1
1,955,072 - AZOBR_RS09355 0.15 +0.3
1,955,075 + AZOBR_RS09355 0.15 +0.2
1,955,075 + AZOBR_RS09355 0.15 +0.2
1,955,076 - AZOBR_RS09355 0.16 -0.1
1,955,076 - AZOBR_RS09355 0.16 +1.3
1,955,076 - AZOBR_RS09355 0.16 +0.7
1,955,252 + AZOBR_RS09355 0.63 +0.7
1,955,252 + AZOBR_RS09355 0.63 +0.3
1,955,252 + AZOBR_RS09355 0.63 -0.9
1,955,252 + AZOBR_RS09355 0.63 +0.8
1,955,253 - AZOBR_RS09355 0.64 +0.1
1,955,253 - AZOBR_RS09355 0.64 +0.3
1,955,253 - AZOBR_RS09355 0.64 +0.7
1,955,253 - AZOBR_RS09355 0.64 +0.1
1,955,253 - AZOBR_RS09355 0.64 +0.5
1,955,285 + AZOBR_RS09355 0.72 -0.2
1,955,286 - AZOBR_RS09355 0.73 +0.2
1,955,847 - AZOBR_RS09360 0.23 -0.1
1,955,888 + AZOBR_RS09360 0.26 -1.4
1,955,888 + AZOBR_RS09360 0.26 -0.6
1,955,889 - AZOBR_RS09360 0.26 +0.3
1,955,892 - AZOBR_RS09360 0.26 -0.5
1,955,892 - AZOBR_RS09360 0.26 +0.4
1,955,892 - AZOBR_RS09360 0.26 +1.5
1,955,892 - AZOBR_RS09360 0.26 +0.4
1,955,892 - AZOBR_RS09360 0.26 -0.7
1,956,248 + AZOBR_RS09360 0.49 -0.8
1,956,345 - AZOBR_RS09360 0.55 -0.3
1,956,345 - AZOBR_RS09360 0.55 +0.2
1,956,345 - AZOBR_RS09360 0.55 +1.5
1,956,345 - AZOBR_RS09360 0.55 -0.2
1,956,375 - AZOBR_RS09360 0.57 +1.0
1,956,375 - AZOBR_RS09360 0.57 +0.2
1,956,375 - AZOBR_RS09360 0.57 -0.3
1,956,377 + AZOBR_RS09360 0.57 -0.2
1,956,377 + AZOBR_RS09360 0.57 +0.4
1,956,378 - AZOBR_RS09360 0.57 +1.8
1,956,378 - AZOBR_RS09360 0.57 -1.5

Or see this region's nucleotide sequence