Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS21785

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS21775 and ABZR86_RS21780 are separated by 199 nucleotidesABZR86_RS21780 and ABZR86_RS21785 are separated by 210 nucleotidesABZR86_RS21785 and ABZR86_RS21790 are separated by 15 nucleotidesABZR86_RS21790 and ABZR86_RS21795 are separated by 13 nucleotides ABZR86_RS21775: ABZR86_RS21775 - disulfide bond formation protein B, at 330,132 to 330,635 _RS21775 ABZR86_RS21780: ABZR86_RS21780 - 50S ribosomal protein L17, at 330,835 to 331,218 _RS21780 ABZR86_RS21785: ABZR86_RS21785 - DNA-directed RNA polymerase subunit alpha, at 331,429 to 332,427 _RS21785 ABZR86_RS21790: ABZR86_RS21790 - 30S ribosomal protein S4, at 332,443 to 333,069 _RS21790 ABZR86_RS21795: ABZR86_RS21795 - 30S ribosomal protein S11, at 333,083 to 333,469 _RS21795 Position (kb) 331 332 333Strain fitness (log2 ratio) -3 -2 -1 0 1at 330.710 kb on - strandat 330.812 kb on + strandat 330.812 kb on + strandat 330.836 kb on + strandat 330.836 kb on + strandat 330.836 kb on + strandat 330.837 kb on - strandat 331.233 kb on - strandat 331.245 kb on - strandat 331.301 kb on - strandat 331.301 kb on - strandat 331.301 kb on - strandat 331.301 kb on - strandat 331.301 kb on - strandat 331.315 kb on - strandat 331.315 kb on - strandat 331.317 kb on - strandat 331.317 kb on - strandat 331.317 kb on - strandat 331.355 kb on - strandat 332.445 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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330,710 - -3.1
330,812 + +0.9
330,812 + -0.9
330,836 + -0.8
330,836 + -0.6
330,836 + -0.4
330,837 - -1.3
331,233 - +0.5
331,245 - +0.3
331,301 - -0.3
331,301 - -1.3
331,301 - -0.3
331,301 - -1.0
331,301 - -0.4
331,315 - -0.5
331,315 - -1.4
331,317 - +0.5
331,317 - +0.3
331,317 - +0.4
331,355 - +0.8
332,445 - -2.6

Or see this region's nucleotide sequence